View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2873_high_5 (Length: 448)
Name: NF2873_high_5
Description: NF2873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2873_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 20 - 447
Target Start/End: Original strand, 54811466 - 54811894
Alignment:
| Q |
20 |
catcatcaagctccatgtaagtagcaatctcaacatttggatctgaccaaaaatcgaatgccagcgacaagtattcatttttgagaatatggacgaatac |
119 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54811466 |
catcaacaagctccatgtaagtagcaatctcaacatttggatctgaccaaaaatcgaatgccagcgacaagtattcatttttgagaatatggacgaatac |
54811565 |
T |
|
| Q |
120 |
tgttaggtttgcacctttcaactctttaacaacatttgtcaatcctatcaacaacgaattagatcctttgataacatcaagtttgggaatattcactact |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||| |
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| T |
54811566 |
tgttaggtttgcacctttcaactctttaacaacatttgtcaatcctatcaacaacgaattagatcctttaataacatcgagtttaggaatattcactact |
54811665 |
T |
|
| Q |
220 |
tctgcgtacttcttaatttcttccac-gtttgtactggtatatcgtctattatattttcaatgagcaacacccttttgtaagatgggatatccttaaact |
318 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54811666 |
tctgcgtacttcttaatttcttccactgtttgtactggtatatcgtctattatattttcaatgagcaacacccttttgtaagatgggatatccttaaact |
54811765 |
T |
|
| Q |
319 |
tggataggaccgaactgtcatctgattggatgaagacttgttgtgtggcctgcttgtcaaaggtagcattgctcaaagcagcggtgacagcacctacaat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54811766 |
tggataggaccgaactgtcatctgattggatgaagacttgttgtgtggcctgcttgtcaaaggtagcattgctcaaagcagcggtgacagcacctacaat |
54811865 |
T |
|
| Q |
419 |
gtcaagacccttctttgatgcgaggtaag |
447 |
Q |
| |
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| T |
54811866 |
gtcaagacccttctttgatgcgaggtaag |
54811894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 34 - 439
Target Start/End: Complemental strand, 16786370 - 16785981
Alignment:
| Q |
34 |
atgtaagtagcaatctcaacatttggatctgaccaaaaatcgaatgccagcgacaagtattcatttttgagaatatggacgaatactgttaggtttgcac |
133 |
Q |
| |
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|||||||||||||| |||||||| |||||| ||||| ||| |||||||| |||| | |||||||||| ||| ||| ||||||||| |||||||||||| |
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| T |
16786370 |
atgtaagtagcaatatcaacattgggatctcaccaataattgaatgccaatgacatgcattcatttttaagagtattgacgaatacggttaggtttgcat |
16786271 |
T |
|
| Q |
134 |
ctttcaactctttaacaacatttgtcaatcctatcaacaacgaattagatcctttgataacatcaagtttgggaatattcactacttctgcgtacttctt |
233 |
Q |
| |
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||||||||||| |||||||||||| |||||||||||| | |||| || | |||||||| | |||||||| ||||||| |||||| ||||||||| |
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| T |
16786270 |
ctttcaactctaaaacaacatttgttaatcctatcaactaggaatcagctgatttgataagagtt--tttgggaagattcactgcttctgtgtacttctt |
16786173 |
T |
|
| Q |
234 |
aatttcttccac-gtttgtactggtatatcgtctattatattttcaatgagcaacacccttttgtaagatgggatatccttaaacttggataggaccgaa |
332 |
Q |
| |
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||||||||||| |||||| |||||||| ||||||| ||| || ||||| |||||||||||||||||||||||| | |||||||||||||| || ||| |
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| T |
16786172 |
aatttcttccaatgtttgttttggtatattgtctattttatcttgaatgaacaacacccttttgtaagatgggatttttttaaacttggatagtactgaa |
16786073 |
T |
|
| Q |
333 |
ctgtcatctgattggatgaagacttgttgtgtggcctgcttgtcaaaggtagcattgctcaaagcagcggtgacagcacctacaatgtcaagacccttct |
432 |
Q |
| |
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|||| |||||||||||| || | ||||||||||||||| || |||||||||| ||||||| |||||||||||||||||||||| | |
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| T |
16786072 |
gtgtcgtctgattggatg--------------ggatttcttgtcaaaggtagc-tttctcaaagcagtggtgacatcacctacaatgtcaagacccttat |
16785988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 447
Target Start/End: Complemental strand, 22123815 - 22123401
Alignment:
| Q |
34 |
atgtaagtagcaatctcaacatttggatctgaccaaaaatcgaatgccagcgacaagtattcatttttgagaatatggacgaatactgttaggtttgcac |
133 |
Q |
| |
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||||||||||||||||| | || || |||||||| |||| || |||| |||| | | ||||| | ||| |||| || |||||||| ||||||||| |
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| T |
22123815 |
atgtaagtagcaatctccatgttagggtctgaccagtaatcaaaagccatagacatgaactcattcctaagagtatgaacaaatactgtgaggtttgcat |
22123716 |
T |
|
| Q |
134 |
ctttcaactctttaacaacatttgtcaatcctatcaacaacgaattagatcctttgataacatcaagtttgggaatattcactacttctgcgtacttctt |
233 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||| | | ||| ||| |||| |||| | || | | ||| |||| ||||||| ||||||| |||||||| |
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| T |
22123715 |
ctttcaactccttaacaacattactcattcctgttagcaaagaaccagatactttaacaatagctgattttggaagattcactgcttctgcatacttctt |
22123616 |
T |
|
| Q |
234 |
aatttcttccacgtttgtact-ggtatatcgtctattatattttcaatgagcaacacccttttgtaagatgggatatccttaaacttggataggaccgaa |
332 |
Q |
| |
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|||||| || ||| || | | ||| ||||| |||| ||| ||||| | ||||| ||||||||||||| || || ||| ||||||| || || || |
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| T |
22123615 |
aatttcatcaacggttttcttaggtgtatcgcctatgttatcttcaactaaaaacactcttttgtaagatgaaatgtctttatacttggacagcactgag |
22123516 |
T |
|
| Q |
333 |
ctgtcatctgattggatgaagacttgttgtgtggcctgcttgtcaaaggtagcattgctcaaagcagcggtgacagcacctacaatgtcaagacccttct |
432 |
Q |
| |
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|| || || ||||| || | |||||||||||| | ||||||||||| || ||||| || || |||| | | |||||||| ||||||||||| || |||| |
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| T |
22123515 |
ctatcgtcggattgaatcagaacttgttgtgtgacttgcttgtcaaaagttgcattacttaaggcagtgcttacagcaccaacaatgtcaaggcctttct |
22123416 |
T |
|
| Q |
433 |
ttgatgcgaggtaag |
447 |
Q |
| |
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|||| || ||||||| |
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| T |
22123415 |
ttgaagcaaggtaag |
22123401 |
T |
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