View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2873_high_6 (Length: 392)
Name: NF2873_high_6
Description: NF2873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2873_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 53 - 372
Target Start/End: Complemental strand, 15273703 - 15273384
Alignment:
| Q |
53 |
aatgagttgaagtaaaaatataggcaaattagagctgtaagtagcaatgaatagaaaattgagggaacaaatgttttggtgagtttttctttgaatgtgt |
152 |
Q |
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| T |
15273703 |
aatgagtggaagtaaaagtataggcaaaatagagctacaagtaacagcgaatagaaaattgagggaacaaatattttggtgagtttttctttgaatgtgt |
15273604 |
T |
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| Q |
153 |
ttgtaattgttaccatcttctttcaaagtgttttcctattgtcccttttggctttgttctacgaaactgaattgaattcaagttactcctgatgatttaa |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||| |
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| T |
15273603 |
ttgtaattgttaccatcttctttcaaagtgttttcctattgtcccttttggctttgttctatgaaactgaattgaattcaacttactcctgatgaattaa |
15273504 |
T |
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| Q |
253 |
attaaactctttcaactttattcttctatctttttcttccatgattgttggatcttgtagtatatccagaaaattttctaataaattgtgaatcatatgt |
352 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
15273503 |
attaaactctttcaactttattcttctatctctttcttccatgattgttggatcttgtagtatatccagaaaattttctaataaatcgtgattcatatgt |
15273404 |
T |
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| Q |
353 |
acctaaattatattttggta |
372 |
Q |
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| T |
15273403 |
acataaattatattttggta |
15273384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 15288929 - 15288984
Alignment:
| Q |
260 |
tctttcaactttattcttctatctttttcttccatgattgttggatcttgtagtat |
315 |
Q |
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| T |
15288929 |
tctttcaactttattttactatctctttcttccatgattgttggatcttgttgtat |
15288984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 15273086 - 15273027
Alignment:
| Q |
266 |
aactttattcttctatctttttcttccatgattgttggatcttgtagtatatccagaaaa |
325 |
Q |
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| T |
15273086 |
aactttatttttctatctctatcttccatgattgttggatcttattgtatctctagaaaa |
15273027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 11821463 - 11821582
Alignment:
| Q |
61 |
gaagtaaaaatataggcaaattagagctgtaagtagcaatgaatagaaaattgagggaacaaatgttttggtgagtttttctttgaatgtgtttgtaatt |
160 |
Q |
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||||||||| |||||||||| ||||||| | ||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11821463 |
gaagtaaaagtataggcaaactagagctaaaggtagcaaagaatagaaaatggagggcacaaatgttttggtgagtttttctttgaatgtgtttataatt |
11821562 |
T |
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| Q |
161 |
gttaccatcttctttcaaag |
180 |
Q |
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|||| ||||||||||||||| |
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| T |
11821563 |
gttatcatcttctttcaaag |
11821582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 53 - 211
Target Start/End: Original strand, 44249717 - 44249875
Alignment:
| Q |
53 |
aatgagttgaagtaaaaatataggcaaattagagctgtaagtagcaatgaatagaaaattgagggaacaaatgttttggtgagtttttctttgaatgtgt |
152 |
Q |
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||||||| ||||||||| ||||| ||||||||||| | |||| | |||||||||||||||||| |||||||||||||||| |||||||||||||| | |
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| T |
44249717 |
aatgagtggaagtaaaagtatagacaaattagagcgaaaggtagtagtgaatagaaaattgagggcacaaatgttttggtgaatttttctttgaatggtt |
44249816 |
T |
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| Q |
153 |
ttgtaattgttaccatcttctttcaaagtgttttcctattgtcccttttggctttgttc |
211 |
Q |
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| T |
44249817 |
ttgtagttgtggtcatcttttttcaaagcgttttcttattctcgtttttggctttgttc |
44249875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 44253327 - 44253425
Alignment:
| Q |
53 |
aatgagttgaagtaaaaatataggcaaattagagctgtaagtagcaatgaatagaaaattgagggaacaaatgttttggtgagtttttctttgaatgtg |
151 |
Q |
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||||||| ||||||||| ||||| |||||||||||| || |||||| ||||||||| |||||| | | ||||||||||||||||||||||||||||||| |
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| T |
44253327 |
aatgagtggaagtaaaagtatagacaaattagagctataggtagcagtgaatagaagattgagtgcaaaaatgttttggtgagtttttctttgaatgtg |
44253425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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