View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2873_high_9 (Length: 346)

Name: NF2873_high_9
Description: NF2873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2873_high_9
NF2873_high_9
[»] chr8 (10 HSPs)
chr8 (12-345)||(2022765-2023098)
chr8 (152-265)||(10768505-10768618)
chr8 (147-309)||(2029476-2029638)
chr8 (147-265)||(2050767-2050885)
chr8 (147-265)||(2055176-2055294)
chr8 (147-309)||(2058000-2058162)
chr8 (145-265)||(1948561-1948681)
chr8 (147-338)||(2037599-2037790)
chr8 (147-264)||(2034035-2034152)
chr8 (147-202)||(2046852-2046907)
[»] chr1 (2 HSPs)
chr1 (221-266)||(16425973-16426018)
chr1 (221-266)||(16442251-16442296)


Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 12 - 345
Target Start/End: Original strand, 2022765 - 2023098
Alignment:
Q  12 gcagagatataatgttggaatacacaaaacaagttatgaaactgggaaatctattgtttgagttattatcagaagcacttggacttgatccaaactattt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2022765 gcagagatataatgttggaatacacaaaacaagttatgaaactgggaaatctattgtttgagttattatcagaagcacttggacttgatccaaactattt 2022864  T
Q  112 gaatgaaatgagatgcaatgaaggacttgcacttgtttgccattactatccttcctgtccagaaccagaattgactttgggaacaaccaagcatacggat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2022865 gaatgaaatgagatgcaatgaaggacttgcacttgtttgccattactatccttcctgtccagaaccagaattgactttgggaataaccaagcatacggat 2022964  T
Q  212 aacgactttatcaccgtgcttctacaagatcatattggcggcctccaagttcttcttgaaaatagttgggttgatgtatcacctgttcctggtgctctag 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2022965 aacgactttatcaccgtgcttctacaagatcatattggcggcctccaagttcttcgtgaaaatagttgggttgatgtatcacctgttcctggtgctctag 2023064  T
Q  312 tcatcaacattggtgatcttctacaggtaacttt 345  Q
    ||||||||||||||||||||||||||||||||||    
T  2023065 tcatcaacattggtgatcttctacaggtaacttt 2023098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 152 - 265
Target Start/End: Original strand, 10768505 - 10768618
Alignment:
Q  152 cattactatccttcctgtccagaaccagaattgactttgggaacaaccaagcatacggataacgactttatcaccgtgcttctacaagatcatattggcg 251  Q
    ||||| |||||| | ||||| ||||||||||||||| ||||||||||||||||| | ||||| || ||  |||| |||||||| ||||| |||||||| |    
T  10768505 cattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaagcattctgataatgatttcctcactgtgcttctccaagaccatattggtg 10768604  T
Q  252 gcctccaagttctt 265  Q
    ||||||||||||||    
T  10768605 gcctccaagttctt 10768618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 147 - 309
Target Start/End: Original strand, 2029476 - 2029638
Alignment:
Q  147 tttgccattactatccttcctgtccagaaccagaattgactttgggaacaaccaagcatacggataacgactttatcaccgtgcttctacaagatcatat 246  Q
    |||||||||| |||||| | ||||| ||||||||||||||| |||||||||| ||||||   || || || ||  |||| |||||||| ||||| |||||    
T  2029476 tttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaacaaagcattgtgacaatgatttcctcacagtgcttctccaagaccatat 2029575  T
Q  247 tggcggcctccaagttcttcttgaaaatagttgggttgatgtatcacctgttcctggtgctct 309  Q
    ||| |||||||||||||||  |||| |||  ||| ||||| || ||||||| ||||| |||||    
T  2029576 tggtggcctccaagttctttatgaagataaatggattgatataacacctgtacctggagctct 2029638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 2050767 - 2050885
Alignment:
Q  147 tttgccattactatccttcctgtccagaaccagaattgactttgggaacaaccaagcatacggataacgactttatcaccgtgcttctacaagatcatat 246  Q
    |||||||||| |||||| | ||||| ||||||||||||||| | |||||||| |||||| | ||||| || ||  |||| |||||||| ||||| |||||    
T  2050767 tttgccattattatcctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctgataatgatttcctcacagtgcttcttcaagaccatat 2050866  T
Q  247 tggcggcctccaagttctt 265  Q
    ||| |||||||||||||||    
T  2050867 tggtggcctccaagttctt 2050885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 2055176 - 2055294
Alignment:
Q  147 tttgccattactatccttcctgtccagaaccagaattgactttgggaacaaccaagcatacggataacgactttatcaccgtgcttctacaagatcatat 246  Q
    ||||||||||||| ||| | ||||| ||||||||||||||| | |||||||| |||||| | ||||| || ||  |||| |||||||| ||||| |||||    
T  2055176 tttgccattactaccctccttgtcctgaaccagaattgactgtcggaacaacaaagcattctgataatgatttcctcacagtgcttcttcaagaccatat 2055275  T
Q  247 tggcggcctccaagttctt 265  Q
    ||| |||||||||||||||    
T  2055276 tggtggcctccaagttctt 2055294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 147 - 309
Target Start/End: Original strand, 2058000 - 2058162
Alignment:
Q  147 tttgccattactatccttcctgtccagaaccagaattgactttgggaacaaccaagcatacggataacgactttatcaccgtgcttctacaagatcatat 246  Q
    |||| ||||| |||||||| | ||| ||||||||||||||| ||||||||||||||||| | ||||| || ||  | ||  ||||||||||||| |||||    
T  2058000 tttgtcattattatccttcttatcccgaaccagaattgactgtgggaacaaccaagcattctgataatgatttcctgacaatgcttctacaagaccatat 2058099  T
Q  247 tggcggcctccaagttcttcttgaaaatagttgggttgatgtatcacctgttcctggtgctct 309  Q
    ||| || ||||||||||||  |||| |||  ||| ||||| || ||||||| ||||| |||||    
T  2058100 tggtggtctccaagttctttatgaagataaatggattgatataacacctgtacctggagctct 2058162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 1948681 - 1948561
Alignment:
Q  145 tgtttgccattactatccttcctgtccagaaccagaattgactttgggaacaaccaagcatacggataacgactttatcaccgtgcttctacaagatcat 244  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||| |||||||||| |||||| | ||  |    ||| |||| |||||||||||||| |||    
T  1948681 tgtttgccattattatccttcttgtcctgaaccagaactgactatgggaacaactaagcattcagaccatagttttctcacagtgcttctacaagaccat 1948582  T
Q  245 attggcggcctccaagttctt 265  Q
    ||||| || ||||||||||||    
T  1948581 attggtggtctccaagttctt 1948561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 338
Target Start/End: Original strand, 2037599 - 2037790
Alignment:
Q  147 tttgccattactatccttcctgtccagaaccagaattgactttgggaacaaccaagcatacggataacgactttatcaccgtgcttctacaagatcatat 246  Q
    |||||||||| |||||||| ||||| ||||||||||||||| |||||||| |||||||| | ||  | |  ||| |||| |||||| | ||||| |||||    
T  2037599 tttgccattattatccttcttgtccggaaccagaattgactgtgggaacagccaagcattcagaccatggttttctcacagtgcttatccaagaccatat 2037698  T
Q  247 tggcggcctccaagttcttcttgaaaatagttgggttgatgtatcacctgttcctggtgctctagtcatcaacattggtgatcttctacagg 338  Q
    ||| || ||||||||||||  |||| |||  ||| ||||| || |||||||  |||| |||||  |  | || |||||||||||||| ||||    
T  2037699 tggtggtctccaagttctttatgaagataaatggattgatataacacctgtatctggagctctcatagttaatattggtgatcttctgcagg 2037790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 264
Target Start/End: Original strand, 2034035 - 2034152
Alignment:
Q  147 tttgccattactatccttcctgtccagaaccagaattgactttgggaacaaccaagcatacggataacgactttatcaccgtgcttctacaagatcatat 246  Q
    ||||||||||||| ||| | ||||| ||||||||||||||| | |||||||| |||||| | ||||| || ||  |||| |||||||||||||| ||| |    
T  2034035 tttgccattactaccctccttgtcctgaaccagaattgactgtaggaacaacaaagcattctgataatgatttcctcacagtgcttctacaagaccatgt 2034134  T
Q  247 tggcggcctccaagttct 264  Q
    ||| || || ||||||||    
T  2034135 tggtggtcttcaagttct 2034152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 2046852 - 2046907
Alignment:
Q  147 tttgccattactatccttcctgtccagaaccagaattgactttgggaacaaccaag 202  Q
    |||||||||| |||||| | ||||| ||||||||||||||| ||||||||||||||    
T  2046852 tttgccattattatcctccttgtcctgaaccagaattgactgtgggaacaaccaag 2046907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 16426018 - 16425973
Alignment:
Q  221 atcaccgtgcttctacaagatcatattggcggcctccaagttcttc 266  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||    
T  16426018 atcacagtgcttctacaagatcatataggtggcctccaagttcttc 16425973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 16442296 - 16442251
Alignment:
Q  221 atcaccgtgcttctacaagatcatattggcggcctccaagttcttc 266  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||    
T  16442296 atcacagtgcttctacaagatcatataggtggcctccaagttcttc 16442251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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