View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2874_high_13 (Length: 256)
Name: NF2874_high_13
Description: NF2874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2874_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 14999455 - 14999681
Alignment:
| Q |
1 |
gacaaaaagaggaaaattatgtgattctcatgccaaagacatgtatgtaatcagaaccnnnnnnnnctatgtactttgtgattcagctgtgcaacaaata |
100 |
Q |
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| T |
14999455 |
gacaaaaagaggaaaattatgtgattctcatgccaaagacatgta----atcagaaccaaaaaaaactatg---------attcagctgtgcaacaaata |
14999541 |
T |
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| Q |
101 |
atgtagttttttaagttttgaatgaggttgatgctcaaactttttaggttggacatgcgggtaacaatttactgtaagctcaatggtgggcatgaaaaac |
200 |
Q |
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| T |
14999542 |
atgtagtttttta-gttttgaatgaggttgatgctcaaactttttaggttggacatgctggtaacaatttactgtaagctcaatggtgggcatgaaaaac |
14999640 |
T |
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| Q |
201 |
ctcttctttttctttttacaatacttggaacatattgaact |
241 |
Q |
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| T |
14999641 |
ctcttctttttctttttacaatacttggaacatattgaact |
14999681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 29468372 - 29468464
Alignment:
| Q |
72 |
tactttgtgattcagctgtgcaacaaataatgtagttttttaagttttgaatgaggttgatgctc--aaactttttaggttggacatgcgggta |
163 |
Q |
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| T |
29468372 |
tactttgtgattcagctgtgcgagaaataaggtagtgtttt-agttttggtcgaggttgatgctcaaaaactttataggttggacatgccggta |
29468464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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