View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2874_high_16 (Length: 231)
Name: NF2874_high_16
Description: NF2874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2874_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 123; Significance: 2e-63; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 66 - 216
Target Start/End: Complemental strand, 11890554 - 11890404
Alignment:
| Q |
66 |
aaattattaaacttcttttggttcaaaataaaactaaagtttcaactctggattgcagttttgagaccaaggataaattaagagtaagaatcactgattc |
165 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11890554 |
aaattattaaactttttttggttcaaaataagactaaattttcaactctgaattgcagttttgaggccaaggataaattaagagtaagaatcactgattc |
11890455 |
T |
|
| Q |
166 |
aaataatcaaagatgggaaattccacaagaattgattccaagagactcatc |
216 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
11890454 |
aaataatcaaagatgggaagttccagaagaattgattccaagagactcatc |
11890404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 66 - 216
Target Start/End: Complemental strand, 11902898 - 11902748
Alignment:
| Q |
66 |
aaattattaaacttcttttggttcaaaataaaactaaagtttcaactctggattgcagttttgagaccaaggataaattaagagtaagaatcactgattc |
165 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11902898 |
aaattattaaactttttttggttcaaaataagactaaattttcaactctgaattgcagttttgaggccaaggataaattaagagtaagaatcactgattc |
11902799 |
T |
|
| Q |
166 |
aaataatcaaagatgggaaattccacaagaattgattccaagagactcatc |
216 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
11902798 |
aaataatcaaagatgggaagttccagaagaattgattccaagagactcatc |
11902748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 11890698 - 11890656
Alignment:
| Q |
1 |
taactaactaactaactaaccaacaaccaatcataatttattg |
43 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
11890698 |
taactaactaactaactaaccaataaccaatcatagtttattg |
11890656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 11903042 - 11903000
Alignment:
| Q |
1 |
taactaactaactaactaaccaacaaccaatcataatttattg |
43 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
11903042 |
taactaactaactaactaaccaataaccaatcatagtttattg |
11903000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University