View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2874_low_10 (Length: 268)
Name: NF2874_low_10
Description: NF2874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2874_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 52771390 - 52771152
Alignment:
| Q |
20 |
gattgatggtgttccaacagtttactggcattaacacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctct |
119 |
Q |
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| T |
52771390 |
gattgatggtgttccaacagtttactggcattaacacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctct |
52771291 |
T |
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| Q |
120 |
tcaaatctcactctttgttgctgcaatgaatgctgtcggaactgttcttggtatttacctcattgatcatgcagggaggaagatattagctctttgtagc |
219 |
Q |
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| T |
52771290 |
tcaaatctcactctttgttgctgcaatgaatgctgtcggaactgttcttggtatttacctcattgatcatgcagggaggaagatattagctctttgtagc |
52771191 |
T |
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| Q |
220 |
ttaggaggagtgtttacatctttggttctcttgtctgtg |
258 |
Q |
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| T |
52771190 |
ttaggaggagtgtttacatctttggttctcttgtctgtg |
52771152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 52 - 230
Target Start/End: Complemental strand, 52767403 - 52767225
Alignment:
| Q |
52 |
aacacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctcttcaaatctcactctttgttgctgcaatgaatg |
151 |
Q |
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| T |
52767403 |
aacacagtgatgtactacagtccaacaattgtccaaatggctggctttcactctaatgagttggctcttcaactctctctcatagttgctggcttgaatg |
52767304 |
T |
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| Q |
152 |
ctgtcggaactgttcttggtatttacctcattgatcatgcagggaggaagatattagctctttgtagcttaggaggagt |
230 |
Q |
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| T |
52767303 |
ctgccggaacagttcttggtatttaccttattgaccatgcaggacggaaaaaattagccctgtatagcttaggaggagt |
52767225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 185
Target Start/End: Original strand, 392439 - 392587
Alignment:
| Q |
37 |
cagtttactggcattaacacagtgatgtactacagtccaaccattgttcaaatggctggatttcaatctaaagagttggctcttcaaatctcactctttg |
136 |
Q |
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|||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| || || | || |||||||||||| | || ||| | | |
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| T |
392439 |
cagtttacaggtataaacacggtgatgtactacagtccaaccattgttcaaatggctggcttccatgccaatcagttggctcttcttctgtccctcatag |
392538 |
T |
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| Q |
137 |
ttgctgcaatgaatgctgtcggaactgttcttggtatttacctcattga |
185 |
Q |
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| T |
392539 |
ttgctggcatgaacgctgtcggaacaattcttggcatttaccttattga |
392587 |
T |
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