View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2874_low_11 (Length: 264)
Name: NF2874_low_11
Description: NF2874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2874_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 38707877 - 38707625
Alignment:
| Q |
1 |
agtaaaactgatcataattgcacaagnnnnnnngacttggtgcgtgcaatatttatgtatttgtagcaacacgtctaggaaaaactcatcccctaatgcg |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38707877 |
agtaaaactgatcataattgcacaagaaaaaaa-acttggtgcgtgcaatatttatgtatttgtagcaacacgtctaggaaaaactcatcccctaatgcg |
38707779 |
T |
|
| Q |
101 |
acaaatatacctattgatctacttagtgccgtataccannnnnnnncaatatttcacactactgtgaattaaattattcccacaaagcgtcacgcaagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38707778 |
acaaatatacctattgatctacttagtgccgtataccattttttttcaatatttcacactactgtgaattaaattattcccacaaagcgtcacgcaagta |
38707679 |
T |
|
| Q |
201 |
aattgtattttatttcaacatcttcataaagttgttgcaaaaaccacaggttct |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
38707678 |
aattgtattttatttcaacatcttcataaagttgttgcaaaaaccacatgttct |
38707625 |
T |
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