View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2874_low_15 (Length: 242)
Name: NF2874_low_15
Description: NF2874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2874_low_15 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 11890960 - 11890722
Alignment:
| Q |
3 |
cacagacaaaatggttacaagtccaagaactaaaaccagaaacattctactacaaatactagctttctgtttcaatgtttttgtcatcttatcccaaact |
102 |
Q |
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| T |
11890960 |
cacaaacaaaatggttacaagtccaagaactaaaaccagcaacattctactaccactactagctttctgtttcaatgtttttgtcatcttatcccaaact |
11890861 |
T |
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| Q |
103 |
gttgcagattcaccatcaaaagaaacacaagttggttatggctacacaatcataagtgtaaaaagtgatccaacaggaaaatctttgtctgctaacctta |
202 |
Q |
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| T |
11890860 |
gttgcagattcaccatcaaaagaaacacaagttggttatggctacacaatcataagtgtaaaaagtgatccaacaggaaaatctttgtctgctaacctt- |
11890762 |
T |
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| Q |
203 |
aaactcatcaaatcctccttggttttcggacccgacattc |
242 |
Q |
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| T |
11890761 |
aaactcatcaaatcctcctcggttttcggacccgacattc |
11890722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 11903304 - 11903066
Alignment:
| Q |
3 |
cacagacaaaatggttacaagtccaagaactaaaaccagaaacattctactacaaatactagctttctgtttcaatgtttttgtcatcttatcccaaact |
102 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903304 |
cacaaacaaaatggttacaagtccaagaactaaaaccagcaacattctactaccactactagctttctgtttcaatgtttttgtcatcttatcccaaact |
11903205 |
T |
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| Q |
103 |
gttgcagattcaccatcaaaagaaacacaagttggttatggctacacaatcataagtgtaaaaagtgatccaacaggaaaatctttgtctgctaacctta |
202 |
Q |
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| T |
11903204 |
gttgcagattcaccatcaaaagaaacacaagttggttatggctacacaatcataagtgtaaaaagtgatccaacaggaaaatctttgtctgctaacctt- |
11903106 |
T |
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| Q |
203 |
aaactcatcaaatcctccttggttttcggacccgacattc |
242 |
Q |
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| T |
11903105 |
aaactcatcaaatcctcctcggttttcggacccgacattc |
11903066 |
T |
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