View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2874_low_16 (Length: 238)
Name: NF2874_low_16
Description: NF2874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2874_low_16 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 43182654 - 43182877
Alignment:
| Q |
17 |
acgaattagaggctttatgccgtattaaagattgtatgtgttctgtgaaatattcttgtggatatctca--gacatcgagttgcttcgagattttgaatg |
114 |
Q |
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| T |
43182654 |
acgaattagaggctttatgccgtattaaagattgtatgtgttctgtgaaatattcttgtggatatctcaaagacatcgagttgcttcgagattttgaatg |
43182753 |
T |
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| Q |
115 |
tgttgtaaacttgttgaacggtttaagtgatccctacaattttgttaaatcacaaattctacgtatggaactttggcactgctaatgatgatgccaaaat |
214 |
Q |
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| T |
43182754 |
tgttgtaaacttgttgaatggtttaagtgatccctacaattttgttaaatcacaaattctacgtatggaactttggcactgctaatgatgatgccaaaat |
43182853 |
T |
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| Q |
215 |
tcttttcaactctactgaaagacc |
238 |
Q |
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| T |
43182854 |
tcttttcaactctactgaaagacc |
43182877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 43063607 - 43063493
Alignment:
| Q |
19 |
gaattagaggctttatgccgtattaaagattgtatgtgttctgtgaaatattcttgtggatatctcagacatcgagttgcttcgagattttgaatgtgtt |
118 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| ||| ||| ||||||| || |
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| T |
43063607 |
gaattataggctttatgccctattaaagattgtatgtgttctgtgaaatattcttctggatatttgcgacatcgagttctaacgaaattctgaatgtttt |
43063508 |
T |
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| Q |
119 |
gtaaacttgttgaac |
133 |
Q |
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| T |
43063507 |
gtaagcttcttgaac |
43063493 |
T |
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