View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2874_low_18 (Length: 211)

Name: NF2874_low_18
Description: NF2874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2874_low_18
NF2874_low_18
[»] chr4 (15 HSPs)
chr4 (89-204)||(46782185-46782300)
chr4 (22-67)||(37880661-37880706)
chr4 (20-66)||(28235653-28235699)
chr4 (22-67)||(56566645-56566690)
chr4 (22-66)||(37880598-37880642)
chr4 (22-65)||(56565693-56565736)
chr4 (22-67)||(44794993-44795038)
chr4 (22-66)||(16983456-16983500)
chr4 (22-66)||(34528099-34528143)
chr4 (22-65)||(16473774-16473817)
chr4 (20-66)||(3186156-3186202)
chr4 (22-67)||(16984256-16984301)
chr4 (22-67)||(39590663-39590708)
chr4 (22-66)||(44674099-44674143)
chr4 (22-66)||(51492006-51492050)
[»] chr5 (10 HSPs)
chr5 (20-66)||(28388612-28388658)
chr5 (20-68)||(25889926-25889974)
chr5 (23-66)||(30705071-30705114)
chr5 (20-66)||(1039839-1039885)
chr5 (20-66)||(42912970-42913016)
chr5 (22-67)||(8680337-8680382)
chr5 (22-67)||(13568170-13568215)
chr5 (22-66)||(2532020-2532064)
chr5 (22-66)||(2532596-2532640)
chr5 (22-66)||(7762338-7762382)
[»] chr3 (12 HSPs)
chr3 (20-66)||(14403063-14403109)
chr3 (20-68)||(4002597-4002645)
chr3 (20-66)||(14398469-14398515)
chr3 (20-68)||(36812768-36812816)
chr3 (22-67)||(4331914-4331959)
chr3 (20-66)||(42165098-42165144)
chr3 (22-66)||(4015223-4015267)
chr3 (22-66)||(42166504-42166548)
chr3 (22-67)||(8475760-8475805)
chr3 (22-66)||(1388199-1388243)
chr3 (22-66)||(43476125-43476169)
chr3 (22-66)||(43478925-43478969)
[»] scaffold0340 (1 HSPs)
scaffold0340 (21-66)||(19163-19208)
[»] chr8 (15 HSPs)
chr8 (20-67)||(39407-39454)
chr8 (20-63)||(20549325-20549368)
chr8 (20-67)||(41743823-41743870)
chr8 (22-66)||(45409806-45409850)
chr8 (20-66)||(23923929-23923975)
chr8 (20-54)||(31960109-31960143)
chr8 (22-67)||(22550959-22551004)
chr8 (22-66)||(34234517-34234561)
chr8 (22-66)||(43262359-43262403)
chr8 (24-66)||(10749770-10749812)
chr8 (20-66)||(28694511-28694557)
chr8 (22-68)||(39604414-39604460)
chr8 (28-68)||(545867-545907)
chr8 (22-66)||(7577683-7577727)
chr8 (22-66)||(34366846-34366890)
[»] scaffold0011 (1 HSPs)
scaffold0011 (20-68)||(235865-235913)
[»] chr2 (7 HSPs)
chr2 (20-67)||(24754124-24754171)
chr2 (22-67)||(41273342-41273387)
chr2 (22-67)||(7184989-7185034)
chr2 (22-66)||(39377635-39377679)
chr2 (20-66)||(28419342-28419388)
chr2 (22-66)||(23346715-23346759)
chr2 (22-66)||(23347422-23347466)
[»] scaffold0116 (1 HSPs)
scaffold0116 (20-66)||(16048-16094)
[»] chr7 (5 HSPs)
chr7 (22-68)||(17834420-17834466)
chr7 (22-66)||(36185651-36185695)
chr7 (28-66)||(29592477-29592515)
chr7 (22-67)||(26833565-26833610)
chr7 (22-67)||(40323201-40323246)
[»] chr1 (14 HSPs)
chr1 (22-68)||(31779961-31780007)
chr1 (20-65)||(98015-98060)
chr1 (22-67)||(26944412-26944457)
chr1 (22-66)||(20114539-20114583)
chr1 (22-66)||(32161387-32161431)
chr1 (22-68)||(94342-94388)
chr1 (22-68)||(9618654-9618700)
chr1 (22-67)||(253372-253417)
chr1 (22-63)||(45976841-45976882)
chr1 (22-66)||(253028-253072)
chr1 (22-66)||(14985273-14985317)
chr1 (20-68)||(18609987-18610035)
chr1 (22-66)||(44596795-44596839)
chr1 (22-66)||(46319684-46319728)
[»] scaffold0206 (1 HSPs)
scaffold0206 (22-66)||(13302-13346)
[»] scaffold0201 (1 HSPs)
scaffold0201 (20-66)||(22337-22383)
[»] chr6 (1 HSPs)
chr6 (22-68)||(11687987-11688033)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 8e-57; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 46782300 - 46782185
Alignment:
Q  89 aaacataattcaactgactaagaatatcaatatcttgaatcccctattaaaagccaacttcagaccttttattaggatagtgcacaggcagccttaacac 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46782300 aaacataattcaactgactaagaatatcaatatcttgaatcccctattaaaagccaacttcagaccttttattaggatagtgcacaggcagccttaacac 46782201  T
Q  189 ttcattcatctcactc 204  Q
    ||||||||| ||||||    
T  46782200 ttcattcatgtcactc 46782185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 37880661 - 37880706
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctca 67  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  37880661 tactcgtgtggcacagccttatgtaatgtgtaaacaacaattctca 37880706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 28235653 - 28235699
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||    
T  28235653 aatactcgtgtggtacagccttatgtaatgtgtaaacaacaattctc 28235699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 56566645 - 56566690
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctca 67  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||    
T  56566645 tactcgtgtgacacagccttatgtaacgtgtaaacaacaattctca 56566690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 37880642 - 37880598
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||    
T  37880642 tactcgtgtggcacagccttatgtaatgtgtaaacagcaattctc 37880598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 56565736 - 56565693
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattct 65  Q
    |||||||||||||||||||||||||| ||||||||| |||||||    
T  56565736 tactcgtgtggcacagccttatgtaatgtgtaaacagcaattct 56565693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 44795038 - 44794993
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctca 67  Q
    ||||||||| ||||||||| |||||||||||||||| |||||||||    
T  44795038 tactcgtgtagcacagcctcatgtaaagtgtaaacagcaattctca 44794993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 16983500 - 16983456
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||||||||||||  || ||||||||||||||||||    
T  16983500 tactcgtgtggcacagccttatcaaatgtgtaaacaacaattctc 16983456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 34528143 - 34528099
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||| |||||||||||||||| || |||||||||||||||    
T  34528143 tactcgtgtagcacagccttatgtaatgtataaacaacaattctc 34528099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 16473774 - 16473817
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattct 65  Q
    ||||||||||||||| |||||||||| ||||||||| |||||||    
T  16473774 tactcgtgtggcacaaccttatgtaatgtgtaaacagcaattct 16473817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 3186156 - 3186202
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||||||||||||||  || ||||||||| ||||||||    
T  3186156 aatactcgtgtggcacagccttatcaaatgtgtaaacagcaattctc 3186202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 16984256 - 16984301
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctca 67  Q
    ||||||||||||||||||||||  || ||||||||| |||||||||    
T  16984256 tactcgtgtggcacagccttatcaaatgtgtaaacagcaattctca 16984301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 39590663 - 39590708
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctca 67  Q
    |||||||||||||||||||||| ||| ||| ||||| |||||||||    
T  39590663 tactcgtgtggcacagccttatataatgtggaaacagcaattctca 39590708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 44674143 - 44674099
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||||| |||||||||| |||  |||||||||||||    
T  44674143 tactcgtgtggcacaaccttatgtaatgtgggaacaacaattctc 44674099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 51492050 - 51492006
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||||| |||||||||| |||  |||||||||||||    
T  51492050 tactcgtgtggcacaaccttatgtaatgtgggaacaacaattctc 51492006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 28388612 - 28388658
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  28388612 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 28388658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 25889974 - 25889926
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctcat 68  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  25889974 aatacttgtgtggcacagccttatgtaaagtgtaaacagcaattctcat 25889926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 30705114 - 30705071
Alignment:
Q  23 actcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||||||||||||| || ||||||||||||||||||    
T  30705114 actcgtgtggcacagccttatgaaatgtgtaaacaacaattctc 30705071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 1039839 - 1039885
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||||||| | |||||||||||||||||| ||||||||    
T  1039839 aatactcgtgtggcacaactttatgtaaagtgtaaacatcaattctc 1039885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 42912970 - 42913016
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||||||||||||||  || ||||||||| ||||||||    
T  42912970 aatactcgtgtggcacagccttatcaaatgtgtaaacagcaattctc 42913016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 8680337 - 8680382
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctca 67  Q
    |||||||||| |||||||||||| || |||| ||||||||||||||    
T  8680337 tactcgtgtgacacagccttatgcaatgtgtcaacaacaattctca 8680382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 13568170 - 13568215
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctca 67  Q
    ||||||| |||||||||||||||||| |||  ||||||||||||||    
T  13568170 tactcgtatggcacagccttatgtaatgtgggaacaacaattctca 13568215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 2532064 - 2532020
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||| ||||||||||||||||||||| |||  |||||||||||||    
T  2532064 tacttgtgtggcacagccttatgtaatgtgggaacaacaattctc 2532020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 2532596 - 2532640
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||||||||||||||||| |||  |||| ||||||||    
T  2532596 tactcgtgtggcacagccttatgtaatgtgggaacagcaattctc 2532640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 7762338 - 7762382
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||||||||||||||||| |||  |||| ||||||||    
T  7762338 tactcgtgtggcacagccttatgtaatgtgggaacagcaattctc 7762382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 14403063 - 14403109
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14403063 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 14403109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 4002597 - 4002645
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctcat 68  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4002597 aatactcgtgtggcacagccttatgtaaagtgtaaacagcaattctcat 4002645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 14398515 - 14398469
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  14398515 aatactcgtgtgacacagccttatgtaaagtgtaaacaacaattctc 14398469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 36812816 - 36812768
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctcat 68  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  36812816 aatactcgtgtggcacatccttatgtaaagtgtaaacagcaattctcat 36812768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 4331914 - 4331959
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctca 67  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||    
T  4331914 tactcgtgtggcacagccttatgtaatgtgtaaacagcaattctca 4331959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 42165144 - 42165098
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||||||||||||||  || ||||||||||||||||||    
T  42165144 aatactcgtgtggcacagccttatcaaatgtgtaaacaacaattctc 42165098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 4015223 - 4015267
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||    
T  4015223 tactcgtgtgacacagccttatgtaatgtgtaaacagcaattctc 4015267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 42166504 - 42166548
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||||    
T  42166504 tactcgtgtggcacaaccttatgtaatgtgtaaacatcaattctc 42166548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 8475805 - 8475760
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctca 67  Q
    ||||||||||||||| ||||||||||  |||||||| |||||||||    
T  8475805 tactcgtgtggcacaaccttatgtaatatgtaaacagcaattctca 8475760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 1388199 - 1388243
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||| ||||||||||||||||||||| |||  |||||||||||||    
T  1388199 tacttgtgtggcacagccttatgtaatgtgggaacaacaattctc 1388243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 43476169 - 43476125
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||||| |||||||||| |||  |||||||||||||    
T  43476169 tactcgtgtggcacaaccttatgtaatgtgagaacaacaattctc 43476125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 43478925 - 43478969
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||||| |||||||||| |||  |||||||||||||    
T  43478925 tactcgtgtggcacaaccttatgtaatgtgggaacaacaattctc 43478969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 19208 - 19163
Alignment:
Q  21 atactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  19208 atactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 19163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 39454 - 39407
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctca 67  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  39454 aatactcgtgtggcacagccttatgtaaagtgtaaacagcaattctca 39407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 20549325 - 20549368
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaatt 63  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  20549325 aatactcgtgtggcacaaccttatgtaaagtgtaaacaacaatt 20549368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 41743870 - 41743823
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctca 67  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  41743870 aatactcgtgtggtacaaccttatgtaaagtgtaaacaacaattctca 41743823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 45409850 - 45409806
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||    
T  45409850 tactcgtgtggcacagccttatgtaatgtgtaaacagcaattctc 45409806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 23923975 - 23923929
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||||| |||||||||||||||||||||| || |||||    
T  23923975 aatactcgtgtggcagagccttatgtaaagtgtaaacagcagttctc 23923929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 31960109 - 31960143
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaa 54  Q
    |||||||||||||||||||||||||||||||||||    
T  31960109 aatactcgtgtggcacagccttatgtaaagtgtaa 31960143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 22550959 - 22551004
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctca 67  Q
    ||||||||||||||||||||||  || |||||||||||||||||||    
T  22550959 tactcgtgtggcacagccttatcaaatgtgtaaacaacaattctca 22551004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 34234561 - 34234517
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||||||||||||  || ||||||||||||||||||    
T  34234561 tactcgtgtggcacagccttatcaaatgtgtaaacaacaattctc 34234517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 43262403 - 43262359
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||||||||||||||||| |||  |||||||||||||    
T  43262403 tactcgtgtggcacagccttatgtaatgtgagaacaacaattctc 43262359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 10749770 - 10749812
Alignment:
Q  24 ctcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||| |||||||||| ||||||||| ||||||||    
T  10749770 ctcgtgtggcacaaccttatgtaatgtgtaaacagcaattctc 10749812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 28694511 - 28694557
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||||||| |||||||||| |||| |||| ||||||||    
T  28694511 aatactcgtgtggcacaaccttatgtaatgtgttaacagcaattctc 28694557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 39604414 - 39604460
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctcat 68  Q
    |||||||||||||||||||||||||| |||   ||||||||||||||    
T  39604414 tactcgtgtggcacagccttatgtaatgtggggacaacaattctcat 39604460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 545907 - 545867
Alignment:
Q  28 tgtggcacagccttatgtaaagtgtaaacaacaattctcat 68  Q
    ||||||||||||||||  || ||||||||||||||||||||    
T  545907 tgtggcacagccttatcaaatgtgtaaacaacaattctcat 545867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 7577683 - 7577727
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||||||||||||||||| |||  |||| ||||||||    
T  7577683 tactcgtgtggcacagccttatgtaatgtgggaacagcaattctc 7577727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 34366890 - 34366846
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||||||||||||||||| |||  |||| ||||||||    
T  34366890 tactcgtgtggcacagccttatgtaatgtgggaacatcaattctc 34366846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 235913 - 235865
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctcat 68  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  235913 aatactcgtgtgacacagccttatgtaatgtgtaaacaacaattctcat 235865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 24754124 - 24754171
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctca 67  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||    
T  24754124 aatactcgtgtgacacagccttatgtaaagtgtaaacagcaattctca 24754171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 41273342 - 41273387
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctca 67  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||    
T  41273342 tactcgtgtggcacagccatatgtaatgtgtaaacaacaattctca 41273387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 7185034 - 7184989
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctca 67  Q
    ||||||| |||||||||||||||||| ||||||||| |||||||||    
T  7185034 tactcgtttggcacagccttatgtaatgtgtaaacagcaattctca 7184989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 39377679 - 39377635
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||||||||||||||||| ||| ||||| ||||||||    
T  39377679 tactcgtgtggcacagccttatgtaatgtggaaacagcaattctc 39377635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 28419388 - 28419342
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||||||||||||||  || ||||||||| ||||||||    
T  28419388 aatactcgtgtggcacagccttatcaaatgtgtaaacagcaattctc 28419342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 23346759 - 23346715
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||||| ||||||  || ||||||||||||||||||    
T  23346759 tactcgtgtggcacaaccttatcaaatgtgtaaacaacaattctc 23346715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 23347422 - 23347466
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||||||||||||  || ||||||||| ||||||||    
T  23347422 tactcgtgtggcacagccttatcaaatgtgtaaacagcaattctc 23347466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 16048 - 16094
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||    
T  16048 aatactcgtgtggcacaaccttatgtaaagtgtaaacagcaattctc 16094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 17834466 - 17834420
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctcat 68  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||    
T  17834466 tactcgtgtggcacagccttatgtaatgtgtaaacatcaattctcat 17834420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 36185651 - 36185695
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||||||||||||||||| ||| ||||| ||||||||    
T  36185651 tactcgtgtggcacagccttatgtaatgtggaaacagcaattctc 36185695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 29592515 - 29592477
Alignment:
Q  28 tgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29592515 tgtggtacagccttatgtaaagtgtaaacagcaattctc 29592477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 26833565 - 26833610
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctca 67  Q
    |||| |||| |||||||||||||||| |||| ||||||||||||||    
T  26833565 tactagtgtagcacagccttatgtaatgtgtcaacaacaattctca 26833610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 40323246 - 40323201
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctca 67  Q
    ||||| |||||||||||||||||||| |||  ||||||||||||||    
T  40323246 tactcatgtggcacagccttatgtaatgtgggaacaacaattctca 40323201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 31780007 - 31779961
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctcat 68  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||    
T  31780007 tactcatgtggcacagccttatgtaatgtgtaaacaacaattctcat 31779961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 98015 - 98060
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattct 65  Q
    ||||||||||||||||||||||||  || |||||||||||||||||    
T  98015 aatactcgtgtggcacagccttatcaaatgtgtaaacaacaattct 98060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 26944457 - 26944412
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctca 67  Q
    |||||||||||||||||||||||||| |||  ||||||||||||||    
T  26944457 tactcgtgtggcacagccttatgtaatgtgggaacaacaattctca 26944412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 20114583 - 20114539
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||||||||||||||||| |||  |||||||||||||    
T  20114583 tactcgtgtggcacagccttatgtaatgtgggaacaacaattctc 20114539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 32161387 - 32161431
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||||||||||||||||| |||  |||||||||||||    
T  32161387 tactcgtgtggcacagccttatgtaatgtgggaacaacaattctc 32161431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 94388 - 94342
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctcat 68  Q
    ||||| ||||||||||||||||  || ||||||||||||||||||||    
T  94388 tactcatgtggcacagccttatcaaatgtgtaaacaacaattctcat 94342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 9618700 - 9618654
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctcat 68  Q
    |||||||||| |||||||||||| || |||| |||||||||||||||    
T  9618700 tactcgtgtgacacagccttatgcaatgtgtcaacaacaattctcat 9618654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 253372 - 253417
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctca 67  Q
    ||||||||||||||||||||| |||| |||  ||||||||||||||    
T  253372 tactcgtgtggcacagccttacgtaatgtgggaacaacaattctca 253417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 45976882 - 45976841
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaatt 63  Q
    |||||||||| |||| |||||||||| |||||||||||||||    
T  45976882 tactcgtgtgacacatccttatgtaacgtgtaaacaacaatt 45976841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 253072 - 253028
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||||||||||||||||| |||  |||| ||||||||    
T  253072 tactcgtgtggcacagccttatgtaatgtgggaacagcaattctc 253028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 14985317 - 14985273
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||| ||||| ||||||||||||||| ||||||||| ||||||||    
T  14985317 tactagtgtgacacagccttatgtaatgtgtaaacagcaattctc 14985273  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 18609987 - 18610035
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctcat 68  Q
    |||| ||||||| |||||||||||  || ||||||||||||||||||||    
T  18609987 aatattcgtgtgacacagccttatcaaatgtgtaaacaacaattctcat 18610035  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 44596839 - 44596795
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||||||| ||||||||| |||  |||||||||||||    
T  44596839 tactcgtgtggcacagtcttatgtaatgtgggaacaacaattctc 44596795  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 46319728 - 46319684
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||||||||| ||||||| |||  |||||||||||||    
T  46319728 tactcgtgtggcacagccatatgtaatgtgggaacaacaattctc 46319684  T

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Target: scaffold0206 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 13302 - 13346
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||||||||||||||||| ||| ||||| ||||||||    
T  13302 tactcgtgtggcacagccttatgtaatgtggaaacagcaattctc 13346  T

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Target: scaffold0201 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 22383 - 22337
Alignment:
Q  20 aatactcgtgtggcacagccttatgtaaagtgtaaacaacaattctc 66  Q
    |||||||||||| |||| |||||||||||||||||| | ||||||||    
T  22383 aatactcgtgtgacacaaccttatgtaaagtgtaaatagcaattctc 22337  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 11687987 - 11688033
Alignment:
Q  22 tactcgtgtggcacagccttatgtaaagtgtaaacaacaattctcat 68  Q
    |||||||||||||||||||||||||| |||  |||| ||||||||||    
T  11687987 tactcgtgtggcacagccttatgtaatgtgggaacagcaattctcat 11688033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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