View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2874_low_3 (Length: 429)
Name: NF2874_low_3
Description: NF2874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2874_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 410
Target Start/End: Complemental strand, 33115738 - 33115345
Alignment:
| Q |
16 |
cagtcacacacaatactacaacttttgttgaagttgattgaaattaaacatgagaaaacaagtctgacaccaccattatggtaaatgagaggaggtcaaa |
115 |
Q |
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| T |
33115738 |
cagtcacacacaatacaatcacttttgttgaagttgattgaaattaaacatgagagaacaagtctcacacacccaatatggtaaatgagaggaggtcaaa |
33115639 |
T |
|
| Q |
116 |
actatatatatattaactcgaagagttctcggtgcaatccttataactcacataatacgtgttgatatttaaataacttaaaaatttgatttgaatcttt |
215 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33115638 |
actatatatatatcaactagaagagttctcggtgcaatccttataactcacataatacgtgttgatatttaaataacttaaaaatttgattcaaatcttt |
33115539 |
T |
|
| Q |
216 |
aaataaatannnnnnnnctgaataaaatattaatctacgtttgctagaggcaacccttttgcagaactctagagtcaaaatatcgtcatatcagaccaat |
315 |
Q |
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||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |
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| T |
33115538 |
aaataaatatatttttt-tgaataaaatattaatctacgtttgccagaggcaaccctttcgcagaactctaaagtcaaaatatcgtcatgtcagaccaac |
33115440 |
T |
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| Q |
316 |
aaaaagcttgtcagtcagctacaatagtttgacaagagcaaccctcgcaaattgacatggcttttgacagggtgagcccttcacaaatttacaat |
410 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33115439 |
aaaaagtttgtcagtcagctacaatagtttgacaagagcaaccctcgcaaattgacatggcttttgatagggtgagcccttcacaaatttacaat |
33115345 |
T |
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