View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2874_low_4 (Length: 383)
Name: NF2874_low_4
Description: NF2874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2874_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 22434623 - 22434967
Alignment:
| Q |
16 |
atcattacaatgactagacagtttaatataagatgccattcaaaaaatagtttcatataaggattggaaaaattagcccttttaaaaattacataatgct |
115 |
Q |
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| T |
22434623 |
atcattacaatgactagacagtttaatataagatgccattcaaaaaatagtttaatataaggattggaaaaattagcccttttaaaaattacataatgct |
22434722 |
T |
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| Q |
116 |
tgtactttaatgactaagcagtaaatattacttcaannnnnnnn-ctttcaaattggttagaaatttaagcataccattttttccactcgaagatccaat |
214 |
Q |
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| T |
22434723 |
tgtactttaatgactaagcagtaaatattacttcaatttttttttctttcaaattggttagaaatttaagcataccattttttccactcgaagatccaat |
22434822 |
T |
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| Q |
215 |
gctcttctccttcatcaggaacaatgctctctagtatacgccccgcgctctatcaattgttgtaaaaaatatttctatagagggcacttgcttgaagatc |
314 |
Q |
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| T |
22434823 |
gcacttctccttcatcaggaacaatgctctctagtatacgccccgcgctctatcaattgttgtaaaaaatatttctatagagggcacttgcttgaagatc |
22434922 |
T |
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| Q |
315 |
aaatgcttttctccttcatcaggatcaatgctctttacaagtttc |
359 |
Q |
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| T |
22434923 |
aaatgcttttctccttcatcaggatcaatgctccttacaagtttc |
22434967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 285 - 348
Target Start/End: Original strand, 22429844 - 22429907
Alignment:
| Q |
285 |
atttctatagagggcacttgcttgaagatcaaatgcttttctccttcatcaggatcaatgctct |
348 |
Q |
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| T |
22429844 |
atttctacagagggcacttgcttgaagatccaatgctcttctccttcatcgggaacaatgctct |
22429907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 285 - 357
Target Start/End: Original strand, 22366186 - 22366258
Alignment:
| Q |
285 |
atttctatagagggcacttgcttgaagatcaaatgcttttctccttcatcaggatcaatgctctttacaagtt |
357 |
Q |
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| T |
22366186 |
atttctacaaagggcacttgcttgaagatccaatgctcttttcctttatcaggagcaatgctctgtataagtt |
22366258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 22429867 - 22429907
Alignment:
| Q |
204 |
gaagatccaatgctcttctccttcatcaggaacaatgctct |
244 |
Q |
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| T |
22429867 |
gaagatccaatgctcttctccttcatcgggaacaatgctct |
22429907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 22465934 - 22466002
Alignment:
| Q |
30 |
tagacagtttaatataaga-tgccattca-aaaaatagtttcatataaggattggaaaaattagcccttt |
97 |
Q |
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| T |
22465934 |
tagacagtttcatataagaatgccattcagaaaaatagtttaatataatgattgg-aaaattagcccttt |
22466002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 348
Target Start/End: Original strand, 22633716 - 22633780
Alignment:
| Q |
284 |
tatttctatagagggcacttgcttgaagatcaaatgcttttctccttcatcaggatcaatgctct |
348 |
Q |
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| T |
22633716 |
tatttctacaaagggcacttgcttgaatatccaatgctcttttccttcattaggagcaatgctct |
22633780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 348
Target Start/End: Original strand, 22352093 - 22352156
Alignment:
| Q |
285 |
atttctatagagggcacttgcttgaagatcaaatgcttttctccttcatcaggatcaatgctct |
348 |
Q |
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| T |
22352093 |
atttctacagagggcacttggttgaagatccaacgttcttttccttcatcaggagcaatgctct |
22352156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 22429755 - 22429802
Alignment:
| Q |
98 |
taaaaattacataatgcttgtactttaatgactaagcagtaaatatta |
145 |
Q |
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| T |
22429755 |
taaaaattacataatgcttgtattttcatgactaaacaataaatatta |
22429802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 22366209 - 22366249
Alignment:
| Q |
204 |
gaagatccaatgctcttctccttcatcaggaacaatgctct |
244 |
Q |
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| T |
22366209 |
gaagatccaatgctcttttcctttatcaggagcaatgctct |
22366249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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