View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2874_low_6 (Length: 341)
Name: NF2874_low_6
Description: NF2874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2874_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 28576219 - 28575911
Alignment:
| Q |
19 |
aggttatgaggggtaaatatcagcgaagtgatattcctgctgagttatttatagcaaaaccgtcggattcaagcctctggaaggctttagtaaagttatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28576219 |
aggttatgaggggtaaatatcagcgaagtgatattcctgctgagttatttatagcaaaaccgtcggattcaagcctctggaaggctttagtaaagttatg |
28576120 |
T |
|
| Q |
119 |
gcctgcgttagagcgaaatattttttggtcgataggcgatggtaaaagtgttggtgcctggagtcaaatgtggattgaggagaggctttgtgtgtccgag |
218 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28576119 |
gcctgcattagagcgaaatattttttggtcgataggcgatggtaaaagtgttggagcctggattcaaatgtggattgaggagaggctttgtgtgtccgag |
28576020 |
T |
|
| Q |
219 |
ttagaaattgatattccgcaatagtgtaaagagatgaaggttgcagatctggttgattttaatggtaattggaattttgaattgttgaatcaatggttgc |
318 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28576019 |
ttagaaattgatattccgcaacagtgtaaagagatgaaggttgcagatctggttgattttaatggtaattggaattttgaattgttgaatcaatggttgc |
28575920 |
T |
|
| Q |
319 |
cttatgatg |
327 |
Q |
| |
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||||||||| |
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| T |
28575919 |
cttatgatg |
28575911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 16236225 - 16236533
Alignment:
| Q |
19 |
aggttatgaggggtaaatatcagcgaagtgatattcctgctgagttatttatagcaaaaccgtcggattcaagcctctggaaggctttagtaaagttatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16236225 |
aggttatgaggggtaaatatcagcgaagtgatattcttgctgagttatttatagcaaaaccgtcggattcaagcctctggaaggctttagtaaagttatg |
16236324 |
T |
|
| Q |
119 |
gcctgcgttagagcgaaatattttttggtcgataggcgatggtaaaagtgttggtgcctggagtcaaatgtggattgaggagaggctttgtgtgtccgag |
218 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16236325 |
gcctgcattagagcgaaatattttttggtcgataggcgatggtaaaagtgttggagcctggagtcaaatgtggattgaggagaggctttgtgtgtccgag |
16236424 |
T |
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| Q |
219 |
ttagaaattgatattccgcaatagtgtaaagagatgaaggttgcagatctggttgattttaatggtaattggaattttgaattgttgaatcaatggttgc |
318 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16236425 |
ttagaaattgatattccgcaacagtgtaaagagatgaaggttgcagatctggttgattttaatggtaattggaattttgaattgttgaatcaatggttgc |
16236524 |
T |
|
| Q |
319 |
cttatgatg |
327 |
Q |
| |
|
||||||||| |
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| T |
16236525 |
cttatgatg |
16236533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 32715127 - 32714819
Alignment:
| Q |
19 |
aggttatgaggggtaaatatcagcgaagtgatattcctgctgagttatttatagcaaaaccgtcggattcaagcctctggaaggctttagtaaagttatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32715127 |
aggttatgaggggtaaatatcagcgaagtgatattcctgctgagttatttatagcaaaaccgtcggattcaagcctctggaaggctttagtaaagttatg |
32715028 |
T |
|
| Q |
119 |
gcctgcgttagagcgaaatattttttggtcgataggcgatggtaaaagtgttggtgcctggagtcaaatgtggattgaggagaggctttgtgtgtccgag |
218 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32715027 |
gcctgctttagagcgaaatattttttggtcgataggcgatggtaaaagtgttggagcctggattcaaatgtggattgaggagaggctttgtgtgtccgag |
32714928 |
T |
|
| Q |
219 |
ttagaaattgatattccgcaatagtgtaaagagatgaaggttgcagatctggttgattttaatggtaattggaattttgaattgttgaatcaatggttgc |
318 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32714927 |
ttagaaattgatattccgcaacagtgtaaagagatgaaggttgcagatctggttgatttttatggtaattggaattttgaattgttgaatcaatggttgc |
32714828 |
T |
|
| Q |
319 |
cttatgatg |
327 |
Q |
| |
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||||||||| |
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| T |
32714827 |
cttatgatg |
32714819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 105 - 327
Target Start/End: Original strand, 18567799 - 18568021
Alignment:
| Q |
105 |
ttagtaaagttatggcctgcgttagagcgaaatattttttggtcgataggcgatggtaaaagtgttggtgcctggagtcaaatgtggattgaggagaggc |
204 |
Q |
| |
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||||||||| |||||||| || ||||| ||||||||||| |||||||||| |||| ||||||||||| || | |||||||||||||||||||| ||||| |
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| T |
18567799 |
ttagtaaagctatggcctacgatagagagaaatatttttgggtcgataggtaatggaaaaagtgttggagctttgagtcaaatgtggattgaggcgaggc |
18567898 |
T |
|
| Q |
205 |
tttgtgtgtccgagttagaaattgatattccgcaatagtgtaaagagatgaaggttgcagatctggttgattttaatggtaattggaattttgaattgtt |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| | || ||||||||||| |||||||||| ||||| ||| ||||||| || |||| |
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| T |
18567899 |
gttgtgtgtccgagttagaaattgatattccgcaagagtgtaaaaacattaaggttgcagagttggttgatttcaatggaaatcggaatttggatatgtt |
18567998 |
T |
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| Q |
305 |
gaatcaatggttgccttatgatg |
327 |
Q |
| |
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|||||||| |||||||||||||| |
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| T |
18567999 |
gaatcaatagttgccttatgatg |
18568021 |
T |
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