View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2874_low_7 (Length: 330)
Name: NF2874_low_7
Description: NF2874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2874_low_7 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 28 - 330
Target Start/End: Complemental strand, 43065732 - 43065432
Alignment:
| Q |
28 |
tatacagaatccaagccaaataattgaataccaaacaaacaagtatgtaataataacaactnnnnnnnnntcattacgataatataataatggcatggta |
127 |
Q |
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| T |
43065732 |
tatacagaatccaagccaaataattgaataccaaacaaacaagtatgtaataataacaactaaaaaaaa--cattacgataatataataatggcatggta |
43065635 |
T |
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| Q |
128 |
atgttaaaatgcaagaatgaagtatatatgagaacacagaaccatcgactattttaaaactagcgattcataaatnnnnnnncgataggattcagaattg |
227 |
Q |
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| T |
43065634 |
atgttaaaatgcaagaatgaagtatatatgagaacacagaaccatcaactattttaaaactagcgattcataaataaaaaaacgataggattcagaattg |
43065535 |
T |
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| Q |
228 |
cgattaaacacgtgcatgaatagaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaatcgatga |
327 |
Q |
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| T |
43065534 |
cgattaaacatgtgcatgaatcgaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaatcgatga |
43065435 |
T |
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| Q |
328 |
tga |
330 |
Q |
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| T |
43065434 |
tga |
43065432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 250 - 330
Target Start/End: Original strand, 43047402 - 43047482
Alignment:
| Q |
250 |
gaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaatcgatgatga |
330 |
Q |
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| T |
43047402 |
gaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaattgattatga |
43047482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 43047239 - 43047289
Alignment:
| Q |
109 |
atataataatggcatggtaatgttaaaatgcaagaatgaagtatatatgag |
159 |
Q |
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| T |
43047239 |
atataataatggcatggtaatgttaaaatgcatgaatgaagaatgtatgag |
43047289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 42159055 - 42159107
Alignment:
| Q |
255 |
acaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaata |
307 |
Q |
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| T |
42159055 |
acaaaagcattattatgtaatcgatcaaagatgtaaagtaaagtacacgaata |
42159107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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