View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2874_low_8 (Length: 322)
Name: NF2874_low_8
Description: NF2874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2874_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 42715099 - 42715395
Alignment:
| Q |
18 |
acgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttgaaatctttcaaattgaaggattttggacaagtgtagggc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42715099 |
acgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttgaaatctttcaaattgaaggattttggacaagtgtagggc |
42715198 |
T |
|
| Q |
118 |
ttgccatagaacaacctaagcatggaactattgtagccacgagcgcacaaaaagttcatatagtcagtaatatttaggtcgtatacaagtccagggtcga |
217 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42715199 |
ttgccatagaaaaacctaagcatggaactattgtagccacgagcgcacaaaaagttcatatagtcagtaatatttaggtcatatacaagtccagggtcga |
42715298 |
T |
|
| Q |
218 |
ccacacgattaggttgaatgtgtcctgctccgtagtcaaatggagttgccttttccttaaatgaatccaaaataggtcccccagtgttgtcttctgt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42715299 |
ccacacgattaggttgaatgtgtcctgctccgtagtcaaatggagttgccttttccttaaatgaatccaaaataggtcccccagtgttgtcttctgt |
42715395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 42736675 - 42736427
Alignment:
| Q |
18 |
acgagtaacatttatagattgtccgactttaaagtccagaattgtgattgctggatagttgaaatctttcaaattgaaggattttggacaagtgtagggc |
117 |
Q |
| |
|
|||||||||||| | ||| ||||| | ||||||||| |||||||||| |||||||| ||||||||| | | |||||| |||||||||||||| || || |
|
|
| T |
42736675 |
acgagtaacattcaaagagtgtccaattttaaagtcaggaattgtgatggctggataattgaaatctattatattgaaagattttggacaagtataaggt |
42736576 |
T |
|
| Q |
118 |
ttgccatagaacaacctaagcatggaactattgtagccacgagcgcacaaaaagttcatatagtcagtaatatttaggtcgtatacaagtccagggtcga |
217 |
Q |
| |
|
| || ||||||| |||| | | ||||| |||||||| || |||||||||| ||| ||| ||| ||||||||| |||||||||||||| || |
|
|
| T |
42736575 |
cttccgtagaacagtttaagttgtttattgttgtatccacgagcacataaaaagttcaaataatcaataacatttaggtcatatacaagtccaggatccg |
42736476 |
T |
|
| Q |
218 |
ccacacgattaggttgaatgtgtcctgctccgtagtcaaatggagttgc |
266 |
Q |
| |
|
||||| |||||||| |||| |||||||| || || |||| |||||||| |
|
|
| T |
42736475 |
ccacatgattaggtcgaatatgtcctgcaccatatgcaaacggagttgc |
42736427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 209
Target Start/End: Original strand, 42742043 - 42742207
Alignment:
| Q |
45 |
tttaaagtccagaattgtgattgctggatagttgaaatctttcaaattgaaggattttggacaagtgtagggcttgccatagaacaacctaagcatggaa |
144 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||| | |||||||||||||| ||||||||||| || | ||||||||||| |||| ||| |
|
|
| T |
42742043 |
tttaaagtcaggaattgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagtgtaaggtcttccatagaacaatttaagttgggag |
42742142 |
T |
|
| Q |
145 |
ctattgtagccacgagcgcacaaaaagttcatatagtcagtaatatttaggtcgtatacaagtcc |
209 |
Q |
| |
|
|| ||||| |||||| | || |||||||||| ||| ||||| ||||||||||| || |||||||| |
|
|
| T |
42742143 |
ctgttgtatccacgaccacataaaaagttcaaataatcagttatatttaggtcatacacaagtcc |
42742207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 45 - 212
Target Start/End: Original strand, 42751402 - 42751569
Alignment:
| Q |
45 |
tttaaagtccagaattgtgattgctggatagttgaaatctttcaaattgaaggattttggacaagtgtagggcttgccatagaacaacctaagcatggaa |
144 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||| | |||||||||||||| ||||||||||| || | ||||||||||| |||| || |
|
|
| T |
42751402 |
tttaaagtcaggaattgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagtgtaaggtcttccatagaacaatttaagttgcgag |
42751501 |
T |
|
| Q |
145 |
ctattgtagccacgagcgcacaaaaagttcatatagtcagtaatatttaggtcgtatacaagtccagg |
212 |
Q |
| |
|
|| ||||| |||||| | || |||||||||| ||| ||||| ||||||||||| || ||||||||||| |
|
|
| T |
42751502 |
ctgttgtatccacgaccacataaaaagttcaaataatcagttatatttaggtcatacacaagtccagg |
42751569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 212
Target Start/End: Original strand, 42760879 - 42761031
Alignment:
| Q |
60 |
tgtgattgctggatagttgaaatctttcaaattgaaggattttggacaagtgtagggcttgccatagaacaacctaagcatggaactattgtagccacga |
159 |
Q |
| |
|
|||||| |||||||| |||||||| | |||||||||||||| ||||||||||| | | ||||||||||| |||| ||| || ||||| |||||| |
|
|
| T |
42760879 |
tgtgatggctggataattgaaatcaattaaattgaaggatttgggacaagtgtaagatcttccatagaacaatttaagttgggagctgttgtatccacga |
42760978 |
T |
|
| Q |
160 |
gcgcacaaaaagttcatatagtcagtaatatttaggtcgtatacaagtccagg |
212 |
Q |
| |
|
| || |||||||||| ||| ||||| ||||||||||| || ||||||||||| |
|
|
| T |
42760979 |
ccacataaaaagttcaaataatcagttatatttaggtcatacacaagtccagg |
42761031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 42767903 - 42767988
Alignment:
| Q |
148 |
ttgtagccacgagcgcacaaaaagttcatatagtcagtaatatttaggtcgtatacaagtccagggtcgaccacacgattaggttg |
233 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||||| || ||||||||||| || |||||||||||||| || || |||||||||| |
|
|
| T |
42767903 |
ttgtagccacggttgcacaaatagttcgtatagtcggtgatatttaggtcataaacaagtccagggtccacggcatgattaggttg |
42767988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 212
Target Start/End: Complemental strand, 23042456 - 23042289
Alignment:
| Q |
45 |
tttaaagtccagaattgtgattgctggatagttgaaatctttcaaattgaaggattttggacaagtgtagggcttgccatagaacaacctaagcatggaa |
144 |
Q |
| |
|
|||||||| | ||| | |||| |||||||| |||||||| | |||||||||||||| ||||||||||| || | ||||||||||| |||| ||| |
|
|
| T |
23042456 |
tttaaagttcggaactatgatggctggataattgaaatcaattaaattgaaggatttgggacaagtgtaaggtcttccatagaacaatttaagttgggag |
23042357 |
T |
|
| Q |
145 |
ctattgtagccacgagcgcacaaaaagttcatatagtcagtaatatttaggtcgtatacaagtccagg |
212 |
Q |
| |
|
| ||||| ||| || | || |||||||||| ||| ||||| ||||||||||| || ||||||||||| |
|
|
| T |
23042356 |
ttgttgtatccatgaccacataaaaagttcaaataatcagttatatttaggtcatacacaagtccagg |
23042289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University