View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2875_high_10 (Length: 374)
Name: NF2875_high_10
Description: NF2875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2875_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 23 - 361
Target Start/End: Original strand, 28303554 - 28303895
Alignment:
| Q |
23 |
catcatcaaccaataaagaaaattaataaactcaatatactaagatatatttaaagagctgcatctctggaaagaagttcttccatacacatcaacctta |
122 |
Q |
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| T |
28303554 |
catcctcaaccaataaagaaaattaataaactcaatatactaagatatatttaaagagctgcatctctggaaagaagttcttccatacacatcgacctta |
28303653 |
T |
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| Q |
123 |
tatcgaagtcctgctgcctacatgcttaagaaacttagttatctcaatcgcgctataaatccaaggaatatcgtatttacacacactctagatagattga |
222 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| |
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| T |
28303654 |
tatccaagtcctgctgcctacatgcttaagaaacttagttatctcaatcgcgctataaatccaaggaatatcgtattcacacacattatagatagattgg |
28303753 |
T |
|
| Q |
223 |
taaacaggtcaaaatatttcagcaagaaatctgctagtttt-gaaagtctactaatgcaatagaccaacaatgaatatgtttttcctcattattannnnn |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
28303754 |
taaacaggtcaaaatatttcagcaagaaatctgctagtttttgaaagtctaccaatgcaatagactaacaatgaatatgtttttcctcattatt--tttc |
28303851 |
T |
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| Q |
322 |
nnccttatt----caaatcagaattatatagacaaggtcttctc |
361 |
Q |
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||||||| ||||||||||||||||| ||||||||||||| |
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| T |
28303852 |
ttccttattaattcaaatcagaattatataaacaaggtcttctc |
28303895 |
T |
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