View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2875_high_11 (Length: 368)
Name: NF2875_high_11
Description: NF2875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2875_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 33 - 362
Target Start/End: Original strand, 46039041 - 46039368
Alignment:
| Q |
33 |
atagacacatgcaaatgctgacatgctaaaagtttgtatataaaaacatcctcactatttaaagcatataactaatctcaagaagaattgnnnnnnnnta |
132 |
Q |
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| T |
46039041 |
atagacacatgcaaatgctgacatgctaaaagtttgtatataaaaacatcctcactatttaaagcata-acttaatctcaagaagaattgaaaaaaa-tc |
46039138 |
T |
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| Q |
133 |
aaattaagattctatcattaattaaagcgacattaatgactattttactagtgttccctaggaggtttgaatatctcttgaggataaaagatcaaattct |
232 |
Q |
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| T |
46039139 |
aaattcagattctatcgttaattaaagcgacattaatgactattttaccagtgttccctaggaggtttgaatatctcttgaggataaaagatcaaattct |
46039238 |
T |
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| Q |
233 |
taccactaaactgacacctcattgatagactaaaacatctatattggggcatcattagcttctgctagatcactgtattgtctctgtagtgctggattta |
332 |
Q |
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| T |
46039239 |
taccactaaactgacacctcattgatagactacaacatctatattggggcatcattagcttctgctagatcactgtattgtctctgtagtgctggattta |
46039338 |
T |
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| Q |
333 |
cacatgcaaacattgattgcctttgcttct |
362 |
Q |
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| T |
46039339 |
cacatgcaaacattgattgcctttgtttct |
46039368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 46038987 - 46039019
Alignment:
| Q |
1 |
atatccattgaaatcaagatacaatcatctata |
33 |
Q |
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| T |
46038987 |
atatccattgaaatcaagatacaatcatctata |
46039019 |
T |
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