View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2875_high_12 (Length: 367)
Name: NF2875_high_12
Description: NF2875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2875_high_12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 90 - 367
Target Start/End: Original strand, 38816178 - 38816455
Alignment:
| Q |
90 |
tcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcatacaactatatacccttctctaac |
189 |
Q |
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| T |
38816178 |
tcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcatacaactatatacccttctctaac |
38816277 |
T |
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| Q |
190 |
agacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaag |
289 |
Q |
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| T |
38816278 |
agacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaag |
38816377 |
T |
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| Q |
290 |
aacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctt |
367 |
Q |
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| T |
38816378 |
aacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctt |
38816455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 367
Target Start/End: Original strand, 38821782 - 38821866
Alignment:
| Q |
280 |
aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctt |
367 |
Q |
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| T |
38821782 |
aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctt |
38821866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 3175557 - 3175606
Alignment:
| Q |
2 |
ttaatcactaccacacaatccattatcaccctttctccaaccgcttggtc |
51 |
Q |
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| T |
3175557 |
ttaatcactgccacacaatccattatcaccctttctccaaccgcttggtc |
3175606 |
T |
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