View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2875_high_14 (Length: 355)
Name: NF2875_high_14
Description: NF2875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2875_high_14 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 4 - 355
Target Start/End: Original strand, 31710287 - 31710637
Alignment:
| Q |
4 |
cagagagactagtcaaccacaatgcaatatttgagaccctc--atatatcttgcaagtgggtaccttgtttgtatccttggatgctgccattcacttaag |
101 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||| |||||||||| | |
|
|
| T |
31710287 |
cagagagactaatcaaccacaatgcaatatttgagaccctctcatatatcttgcaagtgggtacctcgtttttatccttggatgc---cattcacttacg |
31710383 |
T |
|
| Q |
102 |
ttaaaaggatcagtaaattctatttgcttcctggaaaatttggcgctgagacatttgctttgcactgaattggattctgattcctgacctttgataccac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31710384 |
ttaaaaggatcagtaaattctatttgcttcctggaaaatttggcgctgagacatttgctttgcactgaattggattctgattcctgacctttgataccac |
31710483 |
T |
|
| Q |
202 |
tactcgttcttatttttatttttccctcagtttgaaggacttcaaacaatttattgatgcaatggaagcagttaaggataaaagggttgaggttgcagtg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31710484 |
tactcgttcttatttttatttttccctcagtttgaaggacttcaaacaatttattgatgcaatggaagcagttaaggataaaagggttgtggttgcagtg |
31710583 |
T |
|
| Q |
302 |
gcagctcacgtgcacatagatgtggctaacaaggaactttccagcttttatcat |
355 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31710584 |
gcatctcacgtgcacatagatgtggctaacaaggaactttccagcttttatcat |
31710637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 223 - 304
Target Start/End: Original strand, 86165 - 86246
Alignment:
| Q |
223 |
ttccctcagtttgaaggacttcaaacaatttattgatgcaatggaagcagttaaggataaaagggttgaggttgcagtggca |
304 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
86165 |
ttccctcagcttgaaggacttcaaacaattcattgatgcaatggaagcagttaaggataaaggggttgtggttgcagtggca |
86246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University