View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2875_high_15 (Length: 354)
Name: NF2875_high_15
Description: NF2875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2875_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 24027985 - 24028343
Alignment:
| Q |
1 |
tatattgtgtaccagaaagtgactgcgtacaggtcagctggctttgagactgaacttgttcgtatttaggtaagctggattagtaattaaaagcatcatt |
100 |
Q |
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| T |
24027985 |
tatattgtgtaccagaaagtgactgcgtacaggtcagctggctttgagactgaacttgttcgtatttaggtaagctggattagtaattaaaagcatcatt |
24028084 |
T |
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| Q |
101 |
agtgatgaagtggtgcatgacatgtaatacctagtgggaaatgcacaaaaagtggtaaatatagcaacctagctctgaattgattgatctctggaatgtc |
200 |
Q |
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| T |
24028085 |
agtgatgaagtggtgcatgacatgtaatacctagtgggaaatgcacaaaaagtggtaaatatagcaacctagctctgaattgattgatctctggaatgtc |
24028184 |
T |
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| Q |
201 |
agcattgatgaacaacttagtgtaagagtaagtgtttgaaacactaagaggg------------------aattgaaagatataaacgccattggtttaa |
282 |
Q |
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| T |
24028185 |
agcattgatgaacaacttagtgtaagaataagtgtttgaaacactgagagggaagcgacctatagcagcaaattgaaagatataaacgccattggtttaa |
24028284 |
T |
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| Q |
283 |
tatgagtagtagacattaaattactctagcttaaataaatgacggtataaccttcttct |
341 |
Q |
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| T |
24028285 |
tatgagtagtagacattaaattactgtagcttaaataaatgacggtataaccttcttct |
24028343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 10233459 - 10233520
Alignment:
| Q |
184 |
ttgatctctggaatgtcagcattgatgaacaacttagtgtaagagtaagtgtttgaaacact |
245 |
Q |
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|||||||| || |||||| ||||||| ||||| |||||| | ||||||||||| |||||||| |
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| T |
10233459 |
ttgatctcaggcatgtcatcattgataaacaatttagtgaaggagtaagtgttcgaaacact |
10233520 |
T |
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