View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2875_high_17 (Length: 337)
Name: NF2875_high_17
Description: NF2875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2875_high_17 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 27606381 - 27606054
Alignment:
| Q |
1 |
ctatggttggatgggtttcttaaactaaac--actatccttggaggaaaaaagcattctgatctaaaggaactcatatgggataaagaactgaatctgag |
98 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27606381 |
ctatggttggatgggtttcttaaactaaacgtactatccttgcaggaaaaaagcattctgatctaaaggaactcatatgggataaagaactgaatctgtg |
27606282 |
T |
|
| Q |
99 |
agccaacattcatgaaatacttttgccagagtcatgacctatgcagtataaattaataatgcaatttgtgtttttatttgaataaatttcaggaggccat |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27606281 |
agccaacattcatgaaatacttttgccagagtcatgacctatgcagtataaaataataatgcaatttgtgtttttatttgaataaatttcaggaggccat |
27606182 |
T |
|
| Q |
199 |
ccttggataatgtatttgaatgtcgacgcgtttgtaaactattctttccttggataattgaaagaaaaagaaaatatcatgaagttgatgttgcaaactt |
298 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27606181 |
ccttggataatgtattcgaatgtcgacgcgtttgtaaactattctttccttggataattgaaagaaaaagaaaataccatgaagttgatgttgcaaactt |
27606082 |
T |
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| Q |
299 |
ttcttgttcaaggattattgagtctctg |
326 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
27606081 |
ttcttgttcaaggattattgagtctctg |
27606054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 73 - 326
Target Start/End: Complemental strand, 27340564 - 27340288
Alignment:
| Q |
73 |
atatgggataaagaactgaatctgagagccaacattcatgaaatacttttgccagagtcatgacctatgcagtataaattaataatgcaatttgtgtttt |
172 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || | ||||||||||||||| |
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| T |
27340564 |
atatgggataaagaactgaatctgagagccaacattcatgagatcgttttgccagagtcatgacctatgcagtataaaatataattgcaatttgtgtttt |
27340465 |
T |
|
| Q |
173 |
tatttgaataaattt-ca--------------------ggaggccat--ccttggataatgtatttgaatgtcgacgcgtttgtaaactattctttcctt |
249 |
Q |
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||||||| ||||||| || ||||||||| ||||| |||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
27340464 |
tatttgattaaatttacaaccatgctcataattgctatggaggccatatccttgaataatgtatttgaatgtcgacgcgtttgtaaacttttgtttcctt |
27340365 |
T |
|
| Q |
250 |
ggataattgaaagaaaaagaaaatatcatgaagttgatgttgcaaacttttcttgttcaaggattattgagtctctg |
326 |
Q |
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||||||| |||| || || ||||||||||||||||| |||||| | ||||| ||||| |||||| ||||| |||||| |
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| T |
27340364 |
ggataatggaaataataaaaaaatatcatgaagttgttgttgctagcttttgttgttaaaggataattgattctctg |
27340288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 73 - 326
Target Start/End: Complemental strand, 27401304 - 27401028
Alignment:
| Q |
73 |
atatgggataaagaactgaatctgagagccaacattcatgaaatacttttgccagagtcatgacctatgcagtataaattaataatgcaatttgtgtttt |
172 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || | ||||||||||||||| |
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| T |
27401304 |
atatgggataaagaactgaatctgagagccaacattcatgagatcgttttgccagagtcatgacctatgcagtataaaatataattgcaatttgtgtttt |
27401205 |
T |
|
| Q |
173 |
tatttgaataaattt-ca--------------------ggaggccat--ccttggataatgtatttgaatgtcgacgcgtttgtaaactattctttcctt |
249 |
Q |
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||||||| ||||||| || ||||||||| ||||| |||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
27401204 |
tatttgattaaatttacaaccatgctcataattgctatggaggccatatccttgaataatgtatttgaatgtcgacgcgtttgtaaacttttgtttcctt |
27401105 |
T |
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| Q |
250 |
ggataattgaaagaaaaagaaaatatcatgaagttgatgttgcaaacttttcttgttcaaggattattgagtctctg |
326 |
Q |
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||||||| |||| || || ||||||||||||||||| |||||| | ||||| ||||| |||||| ||||| |||||| |
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| T |
27401104 |
ggataatggaaataataaaaaaatatcatgaagttgttgttgctagcttttgttgttaaaggataattgattctctg |
27401028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 27418659 - 27418627
Alignment:
| Q |
1 |
ctatggttggatgggtttcttaaactaaacact |
33 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
27418659 |
ctatggttggatgggtttcttaaactaaacact |
27418627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 25487871 - 25487931
Alignment:
| Q |
76 |
tgggataaagaactgaatctgagagccaacattcatgaaatacttttgccagagtcatgac |
136 |
Q |
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|||||||||||| | ||||||||| || |||||||||| || ||||||| |||||| |||| |
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| T |
25487871 |
tgggataaagaaataaatctgagaaccgacattcatgagatccttttgcaagagtcgtgac |
25487931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 5083543 - 5083680
Alignment:
| Q |
1 |
ctatggttggatgggtttcttaaactaaacactatccttggaggaaaaaagcattctgatctaaaggaactcatatgggataaagaactgaatctgagag |
100 |
Q |
| |
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|||||||||||||| ||||| ||||||||| | |||||| |||||| ||| |||||||||| | ||| | || | ||||||||||| ||||| ||| |
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| T |
5083543 |
ctatggttggatggatttctcaaactaaactccatccttactggaaaagagctttctgatctacaagaagtaatgcgtgataaagaactaaatctaagaa |
5083642 |
T |
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| Q |
101 |
ccaacattcatgaaatacttttgccagagtcatgacct |
138 |
Q |
| |
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| ||||| |||| || ||||||| ||||||||||||| |
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| T |
5083643 |
ctgacatttatgagatccttttgcaagagtcatgacct |
5083680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 5083947 - 5084008
Alignment:
| Q |
258 |
gaaagaaaaagaaaatatcatgaagttgatgttgcaaacttttcttgttcaaggattattga |
319 |
Q |
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||||||||||| ||||||| ||||||||| |||||||||||| |||||||| |||| |||| |
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| T |
5083947 |
gaaagaaaaagcaaatatctggaagttgatattgcaaacttttgttgttcaatgattgttga |
5084008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 68704 - 68736
Alignment:
| Q |
1 |
ctatggttggatgggtttcttaaactaaacact |
33 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
68704 |
ctatggttggatgggtttcttaaactaaacact |
68736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 17989441 - 17989409
Alignment:
| Q |
76 |
tgggataaagaactgaatctgagagccaacatt |
108 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
17989441 |
tgggataaagaactgaatctgagaaccaacatt |
17989409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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