View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2875_high_24 (Length: 308)
Name: NF2875_high_24
Description: NF2875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2875_high_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 28448127 - 28447982
Alignment:
| Q |
1 |
atcgatgtagaggggaggtctgtaggcctgacgcctatagaaatagacaaccactccaacaaaagattgaaggccgtaacttccaacgcacaaaatagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28448127 |
atcgatgtagaggggaggtctgtaggtctgatgcctatagaaatagacaaccactccaacaaaagattgaaggccgtaacttccaacgcacaaaatagga |
28448028 |
T |
|
| Q |
101 |
accccagagagaggaacaccgaagccaaggccagccaaagcccaaa |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28448027 |
accccagagagaggaacaccgaagccaaggccagccaaagcccaaa |
28447982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 18690684 - 18690607
Alignment:
| Q |
66 |
attgaaggccgtaacttccaacgcacaaaataggaaccccagagagaggaacaccgaagccaaggccagccaaagccc |
143 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18690684 |
attgaaggttgtaacttccaacgcaaaaactaggaacctcagagagaggaacaccgaagccaaggccaaccaaagccc |
18690607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University