View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2875_high_28 (Length: 303)
Name: NF2875_high_28
Description: NF2875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2875_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 301
Target Start/End: Complemental strand, 54471311 - 54471029
Alignment:
| Q |
12 |
ttatactgtaggtagttataaactctttgttgagtgctaaacaaaatttaatcttaatcaaaacattggtcatcacgtgtgttgtgctctgtctgtttgt |
111 |
Q |
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| T |
54471311 |
ttatactgtaggtagttataaactctttgttgagtgctaaacaaaatttaatcttaatcaaaacattggtcatcacgtgtgttgtgctctgtctgtttgt |
54471212 |
T |
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| Q |
112 |
tattacaaccaaatatgactccttagtgtttgcaaactggttcgaaatgtctcgtctcgcatcgatgtattttcatgatggcgctgaaactaaaaatgaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
54471211 |
tattacaaccaaatatgactccttagtgtttgcaaactggttcgaaatgtctcgcat--catcgatgtattttcatgatggcgctgaaactaaaaatgaa |
54471114 |
T |
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| Q |
212 |
ataaaactagccaattgttgcttagtatagaaggacaaaattaaaagtggggggaataagccaacttcatttcatttgagatctcgtacg |
301 |
Q |
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|||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54471113 |
ataaaactagccaattgttgcttagttaaaaaggaca-----aaaagtggggggaataagccaacttcatttcatttgagatctcgtacg |
54471029 |
T |
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