View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2875_high_3 (Length: 437)
Name: NF2875_high_3
Description: NF2875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2875_high_3 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 32 - 332
Target Start/End: Original strand, 44476816 - 44477116
Alignment:
| Q |
32 |
gtggtgatatagtatgagttatacaaagatattgagaggaaatattttcaacatggacgacgataaatgagataaactagattttgagagctttgagtac |
131 |
Q |
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| T |
44476816 |
gtggtgatatagtatgagttatacaaagatattgagaggaaatattttcaacatgaacaacgataaatgagagaaactagattttgagagctttgagtac |
44476915 |
T |
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| Q |
132 |
aattcacatgtcttttactaagaatattcttgttcttagttaattaagagctatagtcaattgctttatagctctgtcattgactaatccaactaagcaa |
231 |
Q |
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| T |
44476916 |
aattcacatgtcttttactaagaatattcttgttcttagttaattaagagctatagtcaaatgctttatagctctgttattgactaatccaactaagcaa |
44477015 |
T |
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| Q |
232 |
tttttcttttatgaaaatagtattagtcggactcaatttcaagaggaaaaaagtgcatacatatgtttgactaaaatataagtgaaaaagagtattctac |
331 |
Q |
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| T |
44477016 |
tttttcttttatgaaaatagtattagtcggactcaatttcaagagaaaaaaagtgcatacatatgtttgactaaaatataagtgaaaaagagtattctac |
44477115 |
T |
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| Q |
332 |
g |
332 |
Q |
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| T |
44477116 |
g |
44477116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 370 - 421
Target Start/End: Original strand, 44477161 - 44477212
Alignment:
| Q |
370 |
agctttaatttatgggggtctcaaatatttgatggttgttcaataggcttct |
421 |
Q |
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| T |
44477161 |
agcttaaatttatgggggtctcaaatatttgatggttgttcaataggtttct |
44477212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 12140 - 12190
Alignment:
| Q |
114 |
tttgagagctttgagtacaattcacatgtcttttactaagaatattcttgt |
164 |
Q |
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| T |
12140 |
tttgagagctttgagtacaatctgcatgtctttggctaagaatattcttgt |
12190 |
T |
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