View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2875_high_6 (Length: 420)
Name: NF2875_high_6
Description: NF2875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2875_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 40548080 - 40548496
Alignment:
| Q |
1 |
tatttgttagccttgatgctcttcctgttttatgtcaaagattacatacatttgagtatcaagaagtagccgaacaggtcttcactttggtcctagctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40548080 |
tatttgttagccttgatgctcttcctgttttatgtcaaagattacatacatttgagtatcaagaagtagccgaacaggtcttcactttggtcctagctaa |
40548179 |
T |
|
| Q |
101 |
ctaattttcttatattaaaaatgttaacaacgcacttttcaacactcttttcaacgctttctcctgatagttgaaattgagtcctactccaatggagtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40548180 |
ctaattttcttatattaaaaatgttaacaacgcacttttcaacactcttttcaacgctttctcctgatagttgatattgagtcctactccaatggagtgt |
40548279 |
T |
|
| Q |
201 |
gttcaaaagagaatgttaagagggtgttgctagtacctttatgttcatttttcatctcaaatagaattacaggaatttaagattactattgatgttgcat |
300 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40548280 |
gttcaagagagaatgttaagagtgtgttgctagtacctttatgttcatttttcatctcaaatagaattacaggaatttaagattactattgatgttgcat |
40548379 |
T |
|
| Q |
301 |
ttaagcagtgtatacaagcgccttggaggaaacatcactacaacaaccaattgcttgcttaaaagctggggctaccatgtctattctgaattctattgat |
400 |
Q |
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| T |
40548380 |
ttaagcagtgtatacaa--gccttggaggaaatatcactacaacaaccaattgcttgcttaaaagctggggctaccatgtctattctgaattctattgat |
40548477 |
T |
|
| Q |
401 |
ttcttctcaacaaaaatac |
419 |
Q |
| |
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| T |
40548478 |
ttcttctcaacaaaaatac |
40548496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 40546818 - 40546686
Alignment:
| Q |
243 |
gttcatttttcatctcaaatagaattacaggaatttaagattactattgatgttgcatttaagcagtgtatacaagcgccttggaggaaacatcactaca |
342 |
Q |
| |
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||||| |||||||||||||||||| ||||||||||||||| || ||||||||||||||||| ||||| ||||||| |||||||| |||| || || ||| |
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| T |
40546818 |
gttcaattttcatctcaaatagaaatacaggaatttaagaatattattgatgttgcatttatgcagtttatacaa--gccttgga-gaaaaataaccaca |
40546722 |
T |
|
| Q |
343 |
acaaccaattgcttgcttaaaagctggggctaccat |
378 |
Q |
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||| ||| ||||||||||||| || ||||||||||| |
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| T |
40546721 |
acatccacttgcttgcttaaaggccggggctaccat |
40546686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 413
Target Start/End: Complemental strand, 28779530 - 28779459
Alignment:
| Q |
342 |
aacaaccaattgcttgcttaaaagctggggctaccatgtctattctgaattctattgatttcttctcaacaa |
413 |
Q |
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|||||||| ||||||||||| | || ||||| | ||| || ||||||||| |||||||||||||||||||| |
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| T |
28779530 |
aacaaccacttgcttgcttacaggcaggggcaattatggctgttctgaattatattgatttcttctcaacaa |
28779459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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