View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2875_high_8 (Length: 388)

Name: NF2875_high_8
Description: NF2875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2875_high_8
NF2875_high_8
[»] chr8 (25 HSPs)
chr8 (26-359)||(38453375-38453708)
chr8 (29-188)||(38633057-38633216)
chr8 (29-199)||(39848769-39848939)
chr8 (29-120)||(34539027-34539118)
chr8 (34-126)||(39848636-39848728)
chr8 (29-121)||(34533725-34533817)
chr8 (29-121)||(38632779-38632871)
chr8 (37-112)||(39848261-39848336)
chr8 (42-130)||(34549174-34549262)
chr8 (37-121)||(38632548-38632632)
chr8 (29-120)||(38453890-38453981)
chr8 (29-121)||(34533863-34533955)
chr8 (35-121)||(34916426-34916512)
chr8 (29-121)||(34544775-34544867)
chr8 (29-121)||(39848490-39848582)
chr8 (38-120)||(38632929-38633011)
chr8 (44-121)||(34533587-34533664)
chr8 (29-112)||(34916573-34916656)
chr8 (47-106)||(36951478-36951537)
chr8 (312-359)||(38633358-38633405)
chr8 (35-121)||(34916150-34916236)
chr8 (45-112)||(39848368-39848435)
chr8 (311-357)||(39849066-39849112)
chr8 (317-353)||(36951895-36951931)
chr8 (217-268)||(38633242-38633296)
[»] chr4 (3 HSPs)
chr4 (28-303)||(44474634-44474909)
chr4 (34-101)||(44474364-44474431)
chr4 (34-121)||(44474502-44474589)
[»] chr3 (1 HSPs)
chr3 (64-267)||(7045679-7045879)


Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 26 - 359
Target Start/End: Complemental strand, 38453708 - 38453375
Alignment:
Q  26 atcatgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgaca 125  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38453708 atcatgagttgggctaatggtgatgtttttgatggttgttggtcaaatggacttatacatggatctggagtttttagatttgcaaatggggatgtcgaca 38453609  T
Q  126 ttggtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaatgtacgagggttgcatatgctcaaatggaaaagtgat 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38453608 ttggtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaatgtacgagggttgcatatgctcaaatggaaaagtgat 38453509  T
Q  226 agagaaaggactgatgatatggggccttcaaaatcccgatggagattgtatatgtcctgattcctcatctggtgtgattctttctgttatcgaaagggaa 325  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38453508 agagaaaagactgatgatatgaggccttcaaaatcccgatggagattgtatatgtcctgattcctcatctggtgtgattctttctgttatcgaaatggaa 38453409  T
Q  326 tatatgcaaagagttctgattgtggagaaaatta 359  Q
    ||||||||||||||||||||||||||||||||||    
T  38453408 tatatgcaaagagttctgattgtggagaaaatta 38453375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 29 - 188
Target Start/End: Original strand, 38633057 - 38633216
Alignment:
Q  29 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgacattg 128  Q
    |||| |||||||| ||||||||| ||  ||||||||||||||||||| |||||||||||||||||||||| ||||| ||| ||| |||||||||| ||||    
T  38633057 atgacttgggctactggtgatgtcttcgatggttgttggtcaaatgggcttatacatggatctggagtttatagatatgctaatggggatgtcgatattg 38633156  T
Q  129 gtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaa 188  Q
    ||||||||||||||||||  || |||| ||| |||||||||||||  ||| |||||||||    
T  38633157 gtaacttcaggagtaaacttctccatgtcaatggaaaatacacatgctcagatggaacaa 38633216  T

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Target: chr8; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 39848769 - 39848939
Alignment:
Q  29 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgacattg 128  Q
    |||||||||| |  ||||||||| ||  ||||||||||||||||||| ||||||||||||| |||||||| ||||| ||| ||  |||||||||| ||||    
T  39848769 atgagttgggttgttggtgatgtcttcgatggttgttggtcaaatggacttatacatggatatggagtttatagatatgctaacggggatgtcgatattg 39848868  T
Q  129 gtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaatgtacgagggt 199  Q
    ||||||||||||||||||  || |||| ||| ||||||||||||   |||||||||||||| |||||||||    
T  39848869 gtaacttcaggagtaaacttctccatgacaatggaaaatacacacactcaaatggaacaatatacgagggt 39848939  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 34539118 - 34539027
Alignment:
Q  29 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgt 120  Q
    |||| |||||||||||| ||||||||| ||||||||||||||||||| |||| |||||| |||||||||| ||||||||||||| |||||||    
T  34539118 atgaattgggctaatggcgatgtttttaatggttgttggtcaaatggacttagacatggttctggagtttatagatttgcaaatggggatgt 34539027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 39848636 - 39848728
Alignment:
Q  34 ttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgacat 126  Q
    |||||||||||||||||||||| ||||||||  ||||||||| |||| |||||||| |||||||| ||||||||||||| |||||||| ||||    
T  39848636 ttgggctaatggtgatgtttttgatggttgtatgtcaaatggacttagacatggatttggagtttatagatttgcaaatggggatgtctacat 39848728  T

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Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 34533817 - 34533725
Alignment:
Q  29 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 121  Q
    ||||| ||||||||||||| ||||||  ||||||||||||||||||| |||| |||||||| |||||||| ||||||| ||||| ||||||||    
T  34533817 atgagatgggctaatggtgttgttttcgatggttgttggtcaaatggacttagacatggatatggagtttgtagatttacaaatggggatgtc 34533725  T

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Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 38632779 - 38632871
Alignment:
Q  29 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 121  Q
    ||||||||||||| ||||||||| ||  |||||||||||||| |||| ||||||||||||| |||||||| ||||| ||||||| ||||||||    
T  38632779 atgagttgggctactggtgatgtcttcgatggttgttggtcagatggacttatacatggatttggagtttatagatctgcaaatggggatgtc 38632871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 39848261 - 39848336
Alignment:
Q  37 ggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaat 112  Q
    ||||||||||||||||||| |||||||||||||||||| | || || |||||| ||||||||||||||||||||||    
T  39848261 ggctaatggtgatgtttttaatggttgttggtcaaatgactttgtatatggatatggagtttttagatttgcaaat 39848336  T

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Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 34549262 - 34549174
Alignment:
Q  42 atggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgacattggt 130  Q
    |||||||||||||| ||||||||||||| ||||| |||| |||||||| |||||||| ||||||| ||||| || ||||| ||||||||    
T  34549262 atggtgatgtttttgatggttgttggtctaatggacttacacatggatatggagtttatagattttcaaatgggaatgtctacattggt 34549174  T

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Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 38632548 - 38632632
Alignment:
Q  37 ggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 121  Q
    ||||||||||||||||||  ||| ||||||||||||||| ||| ||||||||| |||||||||||||  ||||||| ||||||||    
T  38632548 ggctaatggtgatgttttggatgcttgttggtcaaatggacttctacatggatttggagtttttagagctgcaaatggggatgtc 38632632  T

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Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 38453981 - 38453890
Alignment:
Q  29 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgt 120  Q
    ||||||||| || |||||||||||||| ||||||||||||||||| | ||| ||||||||| |||||||| ||||| || |||| |||||||    
T  38453981 atgagttggcctgatggtgatgtttttgatggttgttggtcaaatagacttgtacatggatatggagtttatagatctgtaaatggggatgt 38453890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 34533955 - 34533863
Alignment:
Q  29 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 121  Q
    |||| ||||| | |||||||||||||| ||||||||||||||||| | |||| | |||||| |||||||| ||||| ||||||| ||||||||    
T  34533955 atgaattgggttgatggtgatgtttttgatggttgttggtcaaatagacttaaagatggatatggagtttatagatatgcaaatggggatgtc 34533863  T

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Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 34916512 - 34916426
Alignment:
Q  35 tgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 121  Q
    |||||||| | |||||||||  |||||| |||||||||||| | || |||||||| |||||||| ||||||||||||| ||||||||    
T  34916512 tgggctaacgatgatgttttcgatggttattggtcaaatggacataaacatggatatggagtttatagatttgcaaatggggatgtc 34916426  T

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Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 34544867 - 34544775
Alignment:
Q  29 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 121  Q
    |||| ||||| |||||||||||||||  |||| |||||||||||||| | || |||||||| |||||||| ||||||| ||||| || |||||    
T  34544867 atgaattgggttaatggtgatgttttcaatggatgttggtcaaatggacatagacatggatatggagtttatagattttcaaatgggaatgtc 34544775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 39848490 - 39848582
Alignment:
Q  29 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 121  Q
    |||||||||| || ||| ||||| || |||||||||||||||||||| |||  |||||||| |||||||| |||||  |||||| ||||||||    
T  39848490 atgagttgggatactggagatgtcttctatggttgttggtcaaatggacttgcacatggatatggagtttatagatccgcaaatggggatgtc 39848582  T

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Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 38632929 - 38633011
Alignment:
Q  38 gctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgt 120  Q
    ||||| |||||||||||| |||||| || ||||||||| |||| | |||||| |||||||| || |||||||||| |||||||    
T  38632929 gctaacggtgatgtttttgatggttatttgtcaaatggacttagatatggatttggagtttataaatttgcaaatggggatgt 38633011  T

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Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 34533664 - 34533587
Alignment:
Q  44 ggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 121  Q
    |||||||||||  |||||||||||| |||||| |||| ||||||||||||||||| || || ||| ||| ||||||||    
T  34533664 ggtgatgttttcgatggttgttggtaaaatggacttaaacatggatctggagtttatacatatgctaatggggatgtc 34533587  T

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Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 34916656 - 34916573
Alignment:
Q  29 atgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaat 112  Q
    |||| ||||| |||||||| | ||||  ||||||||||||||||||| |||  |||||||| |||||||| ||||| |||||||    
T  34916656 atgaattggggtaatggtgctattttcgatggttgttggtcaaatggactttcacatggatatggagtttatagatctgcaaat 34916573  T

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Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 36951478 - 36951537
Alignment:
Q  47 gatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagattt 106  Q
    ||||||||| |||||||||||| |||||| |||| ||| ||||||||||||| |||||||    
T  36951478 gatgtttttgatggttgttggttaaatggacttagacaaggatctggagtttatagattt 36951537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 359
Target Start/End: Original strand, 38633358 - 38633405
Alignment:
Q  312 ttatcgaaagggaatatatgcaaagagttctgattgtggagaaaatta 359  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  38633358 ttatcgaaagggaatgtatgcaaggagttctaattgtggagaaaatta 38633405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 34916236 - 34916150
Alignment:
Q  35 tgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 121  Q
    |||||||| |||||||||||  |||||| |||||||||||| |  | |||||| | |||||||| ||||||||||||| | ||||||    
T  34916236 tgggctaacggtgatgttttcgatggttattggtcaaatggacagaaacatggctatggagtttatagatttgcaaatggagatgtc 34916150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 39848368 - 39848435
Alignment:
Q  45 gtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaat 112  Q
    ||||||||||| |||||||| | |||| ||  ||||||||||||| |||||||| ||||| |||||||    
T  39848368 gtgatgtttttgatggttgtcgatcaattgcgcttatacatggatttggagtttatagatatgcaaat 39848435  T

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Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 357
Target Start/End: Original strand, 39849066 - 39849112
Alignment:
Q  311 gttatcgaaagggaatatatgcaaagagttctgattgtggagaaaat 357  Q
    |||||| ||||||||||||||||| ||||| | ||||||||||||||    
T  39849066 gttatcaaaagggaatatatgcaaggagttttaattgtggagaaaat 39849112  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 36951895 - 36951931
Alignment:
Q  317 gaaagggaatatatgcaaagagttctgattgtggaga 353  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  36951895 gaaagggaatatatgcaaggagttctaattgtggaga 36951931  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 38633242 - 38633296
Alignment:
Q  217 aaaagtgatagagaaagga---ctgatgatatggggccttcaaaatcccgatgga 268  Q
    |||||||| |||||||| |   ||||||||||||| |||||||||||||||||||    
T  38633242 aaaagtgacagagaaagaagaactgatgatatgggcccttcaaaatcccgatgga 38633296  T

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Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 28 - 303
Target Start/End: Original strand, 44474634 - 44474909
Alignment:
Q  28 catgagttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgacatt 127  Q
    |||||||||| ||||||||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  44474634 catgagttggactaatggtgatgtttttgaaggttgctggtcaaatggacttatacatggatctggagtttttaaatttgcaaatggggatgtcgacatt 44474733  T
Q  128 ggtaacttcaggagtaaacaacttcatggcaacggaaaatacacattttcaaatggaacaatgtacgagggttgcatatgctcaaatggaaaagtgatag 227  Q
    |||||||||||||||||||  ||| ||| |||||||| |||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||||||||    
T  44474734 ggtaacttcaggagtaaacttctttatgacaacggaacatacacatgttcaaatgaaacaatgtacaagggttgcatatgctcaaatgaaaaagtgatag 44474833  T
Q  228 agaaaggactgatgatatggggccttcaaaatcccgatggagattgtatatgtcctgattcctcatctggtgtgat 303  Q
    |||||||||||||||||||| |||||||||||||  |||||| |||||||| || | ||| |||||||||||||||    
T  44474834 agaaaggactgatgatatggagccttcaaaatcctaatggaggttgtatatatcataattgctcatctggtgtgat 44474909  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 44474364 - 44474431
Alignment:
Q  34 ttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagttttta 101  Q
    |||||||| ||| |||||||||  ||||| |||||||||||||||| ||||||||| |||||||||||    
T  44474364 ttgggctattggcgatgtttttattggttcttggtcaaatggccttgtacatggatttggagttttta 44474431  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 44474502 - 44474589
Alignment:
Q  34 ttgggctaatggtgatgttttttatggttgttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtc 121  Q
    ||||||||||| ||||  |||| ||||||||  ||||||||| |||| |||||||| |||||||| || ||||| |||| ||||||||    
T  44474502 ttgggctaatgatgatcattttaatggttgtctgtcaaatgggcttagacatggatttggagtttatacatttgtaaatggggatgtc 44474589  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 64 - 267
Target Start/End: Complemental strand, 7045879 - 7045679
Alignment:
Q  64 ttggtcaaatggccttatacatggatctggagtttttagatttgcaaatagggatgtcgacattggtaacttcaggagtaaacaacttcatggcaacgga 163  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||||||| | |||||| ||||||||||||| | |||| |||  ||  ||| |||||||    
T  7045879 ttggtcaaatggacttatacatggatatggagtttttacatttgcaaatggagatgtcaacattggtaactttaagagtcaacttctctatgacaacgga 7045780  T
Q  164 aaatacacattttcaaatggaacaatgtacgagggttgcatatgctcaaatggaaaagtgatagagaaaggactgatgatatggggccttcaaaatcccg 263  Q
    || | |||||  |||||||||||||||||||| ||   ||| ||     ||| ||||||||||||||||||||| ||||||||| ||| ||||||||| |    
T  7045779 aagtgcacatggtcaaatggaacaatgtacgaagg--ccat-tgtgttgatgaaaaagtgatagagaaaggactaatgatatggagccctcaaaatcctg 7045683  T
Q  264 atgg 267  Q
    ||||    
T  7045682 atgg 7045679  T

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