View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2876_high_13 (Length: 204)
Name: NF2876_high_13
Description: NF2876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2876_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 39091325 - 39091151
Alignment:
| Q |
15 |
agcagagatgttgaagtttgtctttcttatgagattttggaggctttgggaaatgatgctgagttcttggttcctagttctaagtaatgtgacacattat |
114 |
Q |
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| T |
39091325 |
agcatagatgttgaagtttgtctttcttatgagattttggaggctttgggaaatgatgctgagttcttggttcctagttctaagtaatgtgacacattat |
39091226 |
T |
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| Q |
115 |
tattactatcttgtggtgagattgttgtaattatgtaatgatgtaacttaatttatgtttaataagtttctattt |
189 |
Q |
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| T |
39091225 |
tattactatcttgtggtgagattgttgtaattatgtaatgatgtaacttaatttatgtttaataagtttctattt |
39091151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 39087924 - 39087842
Alignment:
| Q |
25 |
ttgaagtttgtctttcttatgagattttggaggctttgggaaatgatgctgagttcttggttcctagttctaagtaatgtgac |
107 |
Q |
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| T |
39087924 |
ttgaagtttgtctttcttatgagattttggaggctttgggaaatgatgctgagttcatggttcctagttctacttaatgtgac |
39087842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 39070871 - 39070784
Alignment:
| Q |
20 |
agatgttgaagtttgtctttcttatgagattttggaggctttgggaaatgatgctgagttcttggttcctagttctaagtaatgtgac |
107 |
Q |
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| T |
39070871 |
agatgttgaaatttgtctttcttatgagattttggaggctttggcaaatgatgttgagttcttggttccaatttctaagtaatgtgac |
39070784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 39082270 - 39082188
Alignment:
| Q |
25 |
ttgaagtttgtctttcttatgagattttggaggctttgggaaatgatgctgagttcttggttcctagttctaagtaatgtgac |
107 |
Q |
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| T |
39082270 |
ttgaagtttgtctttctttcgagatattggaggctttgggaaatgatgccgagttcttggttcctagttctaagtaatctgac |
39082188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 39080345 - 39080264
Alignment:
| Q |
22 |
atgttgaagtttgtctttcttatgagattttggaggctttgggaaatgatgctgagttcttggttcctagttctaagtaatg |
103 |
Q |
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| T |
39080345 |
atgttgagctttgtctttcttatgaaattttggaggctttgggaaatgatactgagttcatggttccatgttctaagtaatg |
39080264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 39097605 - 39097556
Alignment:
| Q |
21 |
gatgttgaagtttgtctttcttatgagattttggaggctttgggaaatga |
70 |
Q |
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| T |
39097605 |
gatgttgaagtttgcctttcttatgatattttggaggctatgggaaatga |
39097556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 39075137 - 39075094
Alignment:
| Q |
28 |
aagtttgtctttcttatgagattttggaggctttgggaaatgat |
71 |
Q |
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| T |
39075137 |
aagtttgtcttccttatgatattttggaggctatgggaaatgat |
39075094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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