View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2876_high_4 (Length: 270)
Name: NF2876_high_4
Description: NF2876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2876_high_4 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: scaffold0188 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 8283 - 8015
Alignment:
| Q |
1 |
ctaacaaaaatacttgtcgaacctccattacacacaaacaccaaattcaaaaccaaacatagtgataataataaaaaactagacaatgataatctttgaa |
100 |
Q |
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| T |
8283 |
ctaacaaaaatacttgtggaacttccattacacacaaacaccaaattcaaaaccaaacctagtgataataataaaaaactagaaaatgataatctttgaa |
8184 |
T |
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| Q |
101 |
acggacgcannnnnnnnnnnnnn-cttctcaaaactcaaataccctaatgagtatatatctcaacgtcacactttattgaaatcttttgcagttattatt |
199 |
Q |
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| T |
8183 |
acggacgcattttttattttttttcttctcaaaactcaaagaccctaatgagtatatatctcaacgtcacactttattgaaatcttgtgcagttattatt |
8084 |
T |
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| Q |
200 |
tatcctaattaatatgatttgaacaatt----aattgaattggcatatagtgtggaatattcatctcag |
264 |
Q |
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| T |
8083 |
tatcctaattaatatgatttgaacaattaattaattgaattggcatatagtgtggaatattcatttcag |
8015 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 13636590 - 13636537
Alignment:
| Q |
22 |
cctccattacacacaaacaccaaattcaaaaccaaacatagtgataataataaa |
75 |
Q |
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| T |
13636590 |
cctccattacacacaaacaccaaattcaaaaccaaacataaagctaataataaa |
13636537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 50965531 - 50965603
Alignment:
| Q |
22 |
cctccattacacacaaacaccaaattcaaaaccaaacatagtgataataataaaaaactagacaatgataatc |
94 |
Q |
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| T |
50965531 |
cctccattgcacacaaacaccaaattcaaaaccaaagctagtagtggtaataaaaaattaggaaatgataatc |
50965603 |
T |
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