View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2876_low_11 (Length: 241)
Name: NF2876_low_11
Description: NF2876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2876_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 33331974 - 33332193
Alignment:
| Q |
22 |
gagtgtctcatcgtaaacacaaaacaaaacatatatcacgaaatttgaaactacaacatcatatcatatcatataacatttaattcatcactttcgttgt |
121 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33331974 |
gagtgtctcatcataaacacaaaacgaaacatatatcacgaaatttgaaactacaacatcatatcatatcatataacatttaattcatcactttcgttgt |
33332073 |
T |
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| Q |
122 |
agtatcaaatcatcactaatggttgaaactatacttggatacccttttaaacgctttttcttggatcatactccaatttttaggggatactctggctcaa |
221 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33332074 |
agtatcaaatcatcactaatggctgaaactatacttggatacccttttaaacgctttttcttggatcatactccaatttttaggggatactctggctcaa |
33332173 |
T |
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| Q |
222 |
cagcactcttggattggatt |
241 |
Q |
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|||||||||||||||||||| |
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| T |
33332174 |
cagcactcttggattggatt |
33332193 |
T |
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