View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2876_low_14 (Length: 236)
Name: NF2876_low_14
Description: NF2876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2876_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 35929171 - 35928949
Alignment:
| Q |
1 |
ttctagaacctcacagaatcctcctaagactctttcttgggaagaggaagatgcatctaaaacagattcttctgctccttatgttacgcctcaagagggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929171 |
ttctagaacctcacagaatcctcctaagactctttcttgggaagaggaagatgcatctaaaacagattcttctgctccttatgttacgcctcaagagggg |
35929072 |
T |
|
| Q |
101 |
ctaaggcaagctgacaagattgatacattgcctggtcaaccatatggagtgaattttgaccaatattcaggctatgtcactgttaatcctgaggctggaa |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929071 |
ctaaggcaagctgacaagattgacacattgcctggtcaaccatatggagtgaattttgaccaatattcaggctatgtcactgttaatcctgaggctggaa |
35928972 |
T |
|
| Q |
201 |
gagagcttttctattattttgtg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
35928971 |
gagagcttttctattattttgtg |
35928949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 35911842 - 35911615
Alignment:
| Q |
2 |
tctagaacctcacagaatcctcctaagactctttcttgggaagaggaagatgcatctaaaacagattcttc------tgctccttatgttacgcctcaag |
95 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||| | || || ||||| | ||||||| |
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| T |
35911842 |
tctagaacctcacagaatcctcctaagactctttcatgggaagaggaagatgcattgaaaacacattcttcgttttctactgctgatgttgcacctcaag |
35911743 |
T |
|
| Q |
96 |
aggggctaaggcaagctgacaagattgatacattgcctggtcaaccatatggagtgaattttgaccaatattcaggctatgtcactgttaatcctgaggc |
195 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
35911742 |
aggggctaatgcaagctgacaagattgacacattgcctggtcaaccctatggggtaaattttgaccaatattcaggctatgtcacagttgatcctgaggc |
35911643 |
T |
|
| Q |
196 |
tggaagagagcttttctattattttgtg |
223 |
Q |
| |
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||| ||||| |||||||||||||||||| |
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| T |
35911642 |
tggtagagaacttttctattattttgtg |
35911615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 35922486 - 35922271
Alignment:
| Q |
14 |
cagaatcctcctaagactctttcttgggaagaggaagatgcatctaaaacagattc---ttctgctccttatgtt---acgcctcaagaggggctaaggc |
107 |
Q |
| |
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||||||||||| ||||| |||||||||||||||| |||||||| |||||| |||| ||||||| |||||||| | |||||||||| |||||| | |
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| T |
35922486 |
cagaatcctcccaagacactttcttgggaagagggagatgcattgaaaacacattctttttctgctgcttatgttgcaccacctcaagaggagctaagac |
35922387 |
T |
|
| Q |
108 |
aagctgacaagattgatacattgcctggtcaaccatatggagtgaattttgaccaatattcaggctatgtcactgttaatcctgaggctggaagagagct |
207 |
Q |
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|||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || |
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| T |
35922386 |
tagctgacaagatcgtcacattgcctggtcaaccctatggagtgaattttgaccaatattcaggctatgtcacagttgatcctgaggctggaagagaact |
35922287 |
T |
|
| Q |
208 |
tttctattattttgtg |
223 |
Q |
| |
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|||||||||||||||| |
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| T |
35922286 |
tttctattattttgtg |
35922271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 35916217 - 35916002
Alignment:
| Q |
14 |
cagaatcctcctaagactctttcttgggaagaggaagatgcatctaaaacagattc---ttctgctccttatgtt---acgcctcaagaggggctaaggc |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||| |||||| |||| ||||||| |||||||| | |||||||||| |||||| | |
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| T |
35916217 |
cagaatcctcctaagacactttcttgggaagagggagatgcattgaaaacacattctttttctgctgcttatgttgcaccacctcaagaggagctaagac |
35916118 |
T |
|
| Q |
108 |
aagctgacaagattgatacattgcctggtcaaccatatggagtgaattttgaccaatattcaggctatgtcactgttaatcctgaggctggaagagagct |
207 |
Q |
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||| |||||||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| || |
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| T |
35916117 |
tagcagacaagatcgtcacattgcctggtcaaccctatggagtaaattttgaccaatattcaggctatgtcacagttgatcctgaggctggaagagaact |
35916018 |
T |
|
| Q |
208 |
tttctattattttgtg |
223 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
35916017 |
tttctattattttgtg |
35916002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 35941351 - 35941136
Alignment:
| Q |
14 |
cagaatcctcctaagactctttcttgggaagaggaagatgcatctaaaacagattcttct---gctccttatgttacgcc---tcaagaggggctaaggc |
107 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |||||||| |||||| || |||| ||| |||||||| | || |||||||| |||||| | |
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| T |
35941351 |
cagaatcctcccaagactctttcttgggaagagggagatgcattgaaaacacttttttcttcggctgcttatgttgcaccacctcaagaggagctaagac |
35941252 |
T |
|
| Q |
108 |
aagctgacaagattgatacattgcctggtcaaccatatggagtgaattttgaccaatattcaggctatgtcactgttaatcctgaggctggaagagagct |
207 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||| || |
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| T |
35941251 |
tagctgacaagatcgtcacattgcctggtcaaccctatggagtgaattttgaccaatattcaggctatgtcacagttgatcctgagactggaagagaact |
35941152 |
T |
|
| Q |
208 |
tttctattattttgtg |
223 |
Q |
| |
|
|||||||||||||||| |
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| T |
35941151 |
tttctattattttgtg |
35941136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 35935813 - 35935586
Alignment:
| Q |
2 |
tctagaacctcacagaatcctcctaagactctttcttgggaagaggaagatgcatctaaaacagattcttct---gctccttatgttacg---cctcaag |
95 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||| ||| |||| |||||| ||||||| ||| |||||||| | ||||||| |
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| T |
35935813 |
tctagaaaatcacagaatcctcccaagactctttcttgggaagagggagaagcattgaaaacactttcttcttctgctgcttatgttgcagcacctcaag |
35935714 |
T |
|
| Q |
96 |
aggggctaaggcaagctgacaagattgatacattgcctggtcaaccatatggagtgaattttgaccaatattcaggctatgtcactgttaatcctgaggc |
195 |
Q |
| |
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||| |||||| | |||||||||||| | ||||||||||||||||| |||| || ||||||||||||| || || ||||| |||||| | |||||||| |
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| T |
35935713 |
aggagctaagactagctgacaagatcgtcacattgcctggtcaacccgatggtgtagattttgaccaatactctggttatgtgactgttgaacctgaggc |
35935614 |
T |
|
| Q |
196 |
tggaagagagcttttctattattttgtg |
223 |
Q |
| |
|
||||||| ||||| |||||||||||| |
|
|
| T |
35935613 |
cggaagagcacttttttattattttgtg |
35935586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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