View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2876_low_16 (Length: 219)
Name: NF2876_low_16
Description: NF2876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2876_low_16 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0512 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 48417956 - 48418160
Alignment:
| Q |
15 |
aatatcattgatagtatttacatacccatgaaagtccatgcacacgtctctcagcttttggtaattcaagataatcaagtaaacaagagaatgcttctga |
114 |
Q |
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| T |
48417956 |
aatatcattgatagtatttacatacccatgaaagtccatgcacacgtttctcagcttttggtaattcgagataatcaagtaaacaagagaatgcttctga |
48418055 |
T |
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| Q |
115 |
tcacgggtgatgatacctctccttgcttcaaaaatcttttgaatcaagtggtttccataagggtgtgtcatgagcatgtgtaaagaatccttcacttcat |
214 |
Q |
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| T |
48418056 |
tcacgggtgatgatacctctccttgcttcaaaaatcttttgaatcaagtggtttccataagggtgtgtcatgagcatgtgtaaagaatccttcacttcat |
48418155 |
T |
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| Q |
215 |
agagg |
219 |
Q |
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| T |
48418156 |
agagg |
48418160 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 729911 - 729826
Alignment:
| Q |
127 |
atacctctccttgcttcaaaaatcttttgaatcaagtggtttccataagggtgtgtcatgagcatgtgtaaagaatccttcacttc |
212 |
Q |
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| T |
729911 |
atacccctccttgcttgaaaaatcttttgaatcaaatagctgccaaaacgatgtgtcatgagctcatgtaaataatccttcacttc |
729826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0512 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0512
Description:
Target: scaffold0512; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 2406 - 2365
Alignment:
| Q |
144 |
aaaaatcttttgaatcaagtggtttccataagggtgtgtcat |
185 |
Q |
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| T |
2406 |
aaaaatcttttgaatcaagtagttgccaaaagggtgtgtcat |
2365 |
T |
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