View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2876_low_2 (Length: 453)
Name: NF2876_low_2
Description: NF2876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2876_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Original strand, 6729561 - 6729981
Alignment:
| Q |
17 |
gagagaagttagagaaatgatatagccataacctataggagagtaaaatccaaaagggggtgtggaagtaagttaagtgatagaactagcaagatggtat |
116 |
Q |
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| T |
6729561 |
gagagaagttagagaaatgatatagccataacctataggagagtaaaatccaaaagggggtgtggaagtaagttaagtgatagaactagcaagatggtat |
6729660 |
T |
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| Q |
117 |
cttttaacgtattttattnnnnnnnnnnnnnngagatagtactctgcatgctgcatatatgtttggtgcgttttcagaaagttgttaaagtaaattactt |
216 |
Q |
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| T |
6729661 |
cttttaacgtattttattcacacacacaga--gagatagtactctgcatgctgcatatatgtttggtacgttttcagaaagttgttaaagtaaattactt |
6729758 |
T |
|
| Q |
217 |
ttgtacgtattcttacaaaggttctatccacatacatatatatataattaaatctgacttatatgtactatgatgctgtcatatactgaggaataaagct |
316 |
Q |
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| T |
6729759 |
ttgtacgtattcttacaaaggttctatccacatacatttatatataattaaatctgacttatatgtactatgatgctgtcatatactgaggaataaagct |
6729858 |
T |
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| Q |
317 |
tattatatagagagatataagaattcatttgtgagtgcatggcatgcagatgcagatttatatgtgcagtgtatatgtattatgtactcactctttcatt |
416 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6729859 |
tattatatagagagatataagaattcatttgtgtgtgcatggcatgcagatgcagatttatatgtgcagtgtatatgtattatgtaatcactctttcatt |
6729958 |
T |
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| Q |
417 |
gactccttcttctctctcatttg |
439 |
Q |
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| T |
6729959 |
gactccttcttctctctcatttg |
6729981 |
T |
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