View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2876_low_4 (Length: 426)

Name: NF2876_low_4
Description: NF2876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2876_low_4
NF2876_low_4
[»] chr5 (6 HSPs)
chr5 (1-199)||(41798496-41798693)
chr5 (297-412)||(41799918-41800033)
chr5 (310-357)||(10595421-10595468)
chr5 (310-412)||(38138067-38138170)
chr5 (226-263)||(41799907-41799944)
chr5 (198-231)||(41798714-41798747)
[»] chr8 (3 HSPs)
chr8 (263-399)||(3380499-3380636)
chr8 (27-202)||(3379949-3380124)
chr8 (198-253)||(3380140-3380195)
[»] chr6 (1 HSPs)
chr6 (315-412)||(2941802-2941899)


Alignment Details
Target: chr5 (Bit Score: 141; Significance: 9e-74; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 41798496 - 41798693
Alignment:
Q  1 taaattttttaaatgttcaaagttagtaccaattccacacgtttcaatcttcttattctacttcatcgtcnnnnnnnnattctctatttcctcattcttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||| ||||||||||||||||    
T  41798496 taaattttttaaatgttcaaagttagtaccaattccacacgtttcaatcttcttattctacttcatcgtcttttttttattctttatttcctcattcttg 41798595  T
Q  101 tatcatccctagagtgctcacaaggcagaaccatcaaattcacaannnnnnnacctttcaagaacaaatatttcgctatattctttcccagtttgcttt 199  Q
    ||||||||||||||||||| |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  41798596 tatcatccctagagtgctcgcaaggcagaaccatcaaattcacaa-ttttttacctttcaagaacaaatatttcgctatattctttcccagtttgcttt 41798693  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 297 - 412
Target Start/End: Original strand, 41799918 - 41800033
Alignment:
Q  297 ggttgcgaatctcctttgaacatttgttttgttttcactagaaatatttcattaaattgttgaattttcaatgtcgcaagacacttcacaaatcaagaag 396  Q
    |||||| |||| | ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41799918 ggttgctaatcgcttttgatcatttgtcttgttttcactagaaatatttcattaaattgttgaattttcaatgtcgcaagacacttcacaaatcaagaag 41800017  T
Q  397 ttagcaaagaagatga 412  Q
    ||||||||||||||||    
T  41800018 ttagcaaagaagatga 41800033  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 10595468 - 10595421
Alignment:
Q  310 ctttgaacatttgttttgttttcactagaaatatttcattaaattgtt 357  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||    
T  10595468 ctttgaacatttgttttgtttttaccagaaatatttcattaaattgtt 10595421  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 412
Target Start/End: Original strand, 38138067 - 38138170
Alignment:
Q  310 ctttgaacatttgttttgttttcactagaaatatttcattaaattgttgaattttca-atgtcgcaagacacttcacaaatcaagaagttagcaaagaag 408  Q
    |||||||||||||||||||||| || ||||||||||||||||||| |||| |||| | | ||| || ||||| ||  ||||||| |||| ||| ||||||    
T  38138067 ctttgaacatttgttttgttttaacaagaaatatttcattaaatttttgattttttacaggtcacatgacacgtccaaaatcaaaaagtaagcgaagaag 38138166  T
Q  409 atga 412  Q
    ||||    
T  38138167 atga 38138170  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 41799907 - 41799944
Alignment:
Q  226 atttttctataggttgctaatcgcttttgatcatttgt 263  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41799907 atttttctataggttgctaatcgcttttgatcatttgt 41799944  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 41798714 - 41798747
Alignment:
Q  198 ttcatcaaaatatctgttttatactgctattttt 231  Q
    ||||||||||||||||||||||||||||||||||    
T  41798714 ttcatcaaaatatctgttttatactgctattttt 41798747  T

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Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 263 - 399
Target Start/End: Original strand, 3380499 - 3380636
Alignment:
Q  263 ttttttgcattatggtgttgtatattttctcatgggttgcgaatctcctttgaacatttgttttgttttcactagaaatatttcattaaattgttgaa-t 361  Q
    ||||||| |||||| ||||||||||||||  |||||||||  ||||||||||||||||||||||||||| || |||||||||| |||||||||||||| |    
T  3380499 ttttttgtattatgttgttgtatattttcctatgggttgcttatctcctttgaacatttgttttgtttttaccagaaatattttattaaattgttgaatt 3380598  T
Q  362 tttcaatgtcgcaagacacttcacaaatcaagaagtta 399  Q
    |||  ||||| |||||||||||||||||||||||||||    
T  3380599 ttttgatgtcacaagacacttcacaaatcaagaagtta 3380636  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 3379949 - 3380124
Alignment:
Q  27 taccaattccacacgtttcaatcttcttattctacttcatcgtcnnnnnnnnatt-ctctat-ttcctcattcttgtatcatccctagagtgctcacaag 124  Q
    ||||||||||||||||||||||||||||||||||||||||| ||        |||  ||||| |||||||||||| ||| ||||||||||||||||||||    
T  3379949 taccaattccacacgtttcaatcttcttattctacttcatcatcttttttttattattctatattcctcattcttctattatccctagagtgctcacaag 3380048  T
Q  125 gcagaaccatcaaattcacaannnnnnnacctttcaagaacaaatatttcgctatattctttcccagtttgctttcat 202  Q
     || ||||||| || ||||||       ||||| ||||||||||||||| || ||| |||||||||||||||||||||    
T  3380049 ccacaaccatcgaactcacaa--attttaccttccaagaacaaatattttgccatactctttcccagtttgctttcat 3380124  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 3380140 - 3380195
Alignment:
Q  198 ttcatcaaaatatctgttttatactgctatttttctataggttgctaatcgctttt 253  Q
    ||||||||||| | ||||||||| |||||||||||||| ||||||||||| |||||    
T  3380140 ttcatcaaaatctttgttttataatgctatttttctatgggttgctaatcactttt 3380195  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 412
Target Start/End: Original strand, 2941802 - 2941899
Alignment:
Q  315 aacatttgttttgttttcactagaaatatttcattaaattgttgaattttcaatgtcgcaagacacttcacaaatcaagaagttagcaaagaagatga 412  Q
    ||||||||||||||||| || |||||||||||||||||||| ||  || | |   || || |||||||   |||| ||||||||||||||||||||||    
T  2941802 aacatttgttttgtttttaccagaaatatttcattaaattgctgttttcttaccatcacaggacactttcaaaataaagaagttagcaaagaagatga 2941899  T

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