View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2876_low_6 (Length: 284)
Name: NF2876_low_6
Description: NF2876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2876_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 49 - 272
Target Start/End: Complemental strand, 43659935 - 43659712
Alignment:
| Q |
49 |
agtttgtatcaattttgttttttatggttgttatcaattagtttcaggatattttaagttagttaggattactagctccttaaccttgacttgtatatac |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43659935 |
agtttgtatcaattttgttttttatggttgttatcaattagtttcaggatattttaagttagttaggattactagctccttaaccttgacttgtatatac |
43659836 |
T |
|
| Q |
149 |
attgtacttcattcattattgtatattgatcaccattaaagtggaatacaattgagttaattcagaactaatcagtttctcaatattcatgcatcaaatt |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43659835 |
attgtacttcattcattattgtatattgatcaccattaaagtggaatacaattgagttaattcagaactaatcagtttctcaatattcatgcatcaaatt |
43659736 |
T |
|
| Q |
249 |
caatagtgatgagtgtgaaggatg |
272 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
43659735 |
caatagtgatgagtgtgagggatg |
43659712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 43660002 - 43659961
Alignment:
| Q |
12 |
acagacagaggcactacctaaaagatagccatggttaagttt |
53 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43660002 |
acagacagaggcactacctaaaagataaccatggttaagttt |
43659961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University