View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2876_low_8 (Length: 251)
Name: NF2876_low_8
Description: NF2876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2876_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 41025910 - 41025674
Alignment:
| Q |
1 |
acaacaactcctaattattttagtaatcatcatggatagtttatgttggctgagacgtcgtgaaaatgtgctagacactctctcatcaaagggaagtttg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41025910 |
acaacaactcctaattatttcggtaatcatcatggatagtttatgttggctgagacgtcgtgaaaatgtgctagacactctctcatcgaagggaagtttg |
41025811 |
T |
|
| Q |
101 |
ttgcattatttgagtcgatga-gatagtgtacagtaaagacgttgatcgtgttgtgtttgagagtgattctcaaattttactaaatgttgtttacattaa |
199 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41025810 |
ttgcattatttgagttgatgaggatagtgtccagtaaagacgttgctcgtgttgtgtttgagagtgattctcaaattttactaaatgttgtttacattaa |
41025711 |
T |
|
| Q |
200 |
taattaaagcttactttaatgctattgtttctagtat |
236 |
Q |
| |
|
| ||| | ||||||||||||| ||||||||||||||| |
|
|
| T |
41025710 |
tgattgaggcttactttaatgttattgtttctagtat |
41025674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University