View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2877_high_12 (Length: 250)

Name: NF2877_high_12
Description: NF2877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2877_high_12
NF2877_high_12
[»] chr3 (2 HSPs)
chr3 (140-250)||(8528529-8528647)
chr3 (11-80)||(8528336-8528405)
[»] chr5 (5 HSPs)
chr5 (17-66)||(1418934-1418983)
chr5 (17-66)||(16308577-16308626)
chr5 (17-66)||(27756783-27756832)
chr5 (17-66)||(25916276-25916325)
chr5 (17-66)||(30332295-30332344)
[»] chr4 (11 HSPs)
chr4 (17-66)||(42889808-42889857)
chr4 (17-67)||(18597643-18597693)
chr4 (17-66)||(54534990-54535039)
chr4 (17-66)||(19994510-19994559)
chr4 (17-66)||(32082631-32082680)
chr4 (17-66)||(42977210-42977259)
chr4 (17-66)||(42978917-42978966)
chr4 (17-66)||(48711870-48711919)
chr4 (17-66)||(48713460-48713509)
chr4 (17-66)||(55947372-55947421)
chr4 (17-66)||(55948951-55949000)
[»] chr1 (7 HSPs)
chr1 (17-66)||(24438946-24438995)
chr1 (17-66)||(50317048-50317097)
chr1 (17-67)||(31321020-31321070)
chr1 (17-66)||(7653698-7653747)
chr1 (17-66)||(16673254-16673303)
chr1 (17-66)||(36145356-36145405)
chr1 (17-65)||(7185854-7185902)
[»] chr8 (3 HSPs)
chr8 (17-66)||(3158035-3158084)
chr8 (17-66)||(26719397-26719446)
chr8 (17-66)||(25265903-25265952)
[»] chr7 (5 HSPs)
chr7 (17-66)||(31392070-31392119)
chr7 (17-66)||(3704410-3704459)
chr7 (17-66)||(40028469-40028518)
chr7 (17-66)||(45277965-45278014)
chr7 (18-66)||(11671285-11671333)
[»] chr2 (4 HSPs)
chr2 (27-66)||(37393901-37393940)
chr2 (17-60)||(45493030-45493073)
chr2 (17-60)||(45500772-45500815)
chr2 (17-55)||(22053148-22053186)
[»] scaffold0512 (1 HSPs)
scaffold0512 (20-62)||(10125-10167)
[»] chr6 (3 HSPs)
chr6 (17-66)||(1256726-1256775)
chr6 (17-66)||(1258438-1258487)
chr6 (20-60)||(1443435-1443475)


Alignment Details
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 140 - 250
Target Start/End: Original strand, 8528529 - 8528647
Alignment:
Q  140 gaatcaaatatcttttacgtacaactgtagagattaattttcaaattgaatatg-------aacgcaatgattgacaattctct-ccccaaaaagactaa 231  Q
    ||||| |||||||||| ||||||||| | |||||||||||||||||||| ||||       | | ||||||||||||||||||| ||||||  |||||||    
T  8528529 gaatcgaatatcttttgcgtacaactcttgagattaattttcaaattgattatgactgcaaaccacaatgattgacaattctctcccccaaggagactaa 8528628  T
Q  232 cccttcaccacaactatgc 250  Q
    |||||||||||||| ||||    
T  8528629 cccttcaccacaaccatgc 8528647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 8528336 - 8528405
Alignment:
Q  11 caaaggaagatacagggacgaaaacaaaaaacacgtgaatttacatggacgatttaatcacttaagcttc 80  Q
    |||| ||||||||| || ||||||| ||| ||||||||| |||| |||||||||||| || |||||||||    
T  8528336 caaatgaagatacatgggcgaaaaccaaatacacgtgaacttacttggacgatttaaccatttaagcttc 8528405  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 1418934 - 1418983
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  1418934 aagatacagggacgaaaacaaaaaacacgtcaaattacagggacgattta 1418983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 16308626 - 16308577
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  16308626 aagatacagggacgaaaaccaaaaacacgcgaacttacagggacgattta 16308577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 27756783 - 27756832
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||||||||||||| ||| ||| | ||||||||||    
T  27756783 aagatacagggacgaaaacaaaaaacacgcgaacttagagggacgattta 27756832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 25916276 - 25916325
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||| ||||| |||||||||  || ||||||||||||||||    
T  25916276 aagatacagggacaaaaaccaaaaacacgccaaattacatggacgattta 25916325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 30332344 - 30332295
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||||||||| |||  || ||||| ||||||||||    
T  30332344 aagatacagggacgaaaacaaaaaatacgccaaattacagggacgattta 30332295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 42889808 - 42889857
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    |||||||| |||||||||||||||||||||||| ||||| ||||||||||    
T  42889808 aagatacaaggacgaaaacaaaaaacacgtgaacttacagggacgattta 42889857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 18597693 - 18597643
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgatttaa 67  Q
    ||||||||||||||||||| |||||||||  || |||||||||||||||||    
T  18597693 aagatacagggacgaaaaccaaaaacacggcaaattacatggacgatttaa 18597643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 54535039 - 54534990
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    |||| |||||||||||||| ||||||||| ||| ||||||||||||||||    
T  54535039 aagacacagggacgaaaaccaaaaacacgcgaacttacatggacgattta 54534990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 19994559 - 19994510
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||| |||||||||  || ||||| ||||||||||    
T  19994559 aagatacagggacgaaaaccaaaaacacgccaaattacagggacgattta 19994510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 32082631 - 32082680
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||| |||||||||  || ||||| ||||||||||    
T  32082631 aagatacagggacgaaaaccaaaaacacgccaaattacacggacgattta 32082680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 42977259 - 42977210
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||| |||||||||  || ||||| ||||||||||    
T  42977259 aagatacagggacgaaaaccaaaaacacgccaaattacaaggacgattta 42977210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 42978917 - 42978966
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||| |||||||||  || ||||| ||||||||||    
T  42978917 aagatacagggacgaaaaccaaaaacacgccaaattacaaggacgattta 42978966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 48711919 - 48711870
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    |||||||| ||||||||||||||||||||  || ||||| ||||||||||    
T  48711919 aagatacaaggacgaaaacaaaaaacacgcaaaattacaaggacgattta 48711870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 48713460 - 48713509
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||| |||||||||  || ||||| ||||||||||    
T  48713460 aagatacagggacgaaaaccaaaaacacgccaaattacagggacgattta 48713509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 55947421 - 55947372
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||| ||||| |||| || ||||| ||||||||||    
T  55947421 aagatacagggacgaaaaccaaaaatacgtcaaattacagggacgattta 55947372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 55948951 - 55949000
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||| |||||||||  || ||||| ||||||||||    
T  55948951 aagatacagggacgaaaaccaaaaacacgccaaattacaaggacgattta 55949000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 24438946 - 24438995
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  24438946 aagatacagggacgaaaaccaaaaacacgcgaatttacagggacgattta 24438995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 50317048 - 50317097
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||  ||||||||| ||| ||||||||||||||||    
T  50317048 aagatacagggacgaaaatcaaaaacacgcgaacttacatggacgattta 50317097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 31321070 - 31321020
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgatttaa 67  Q
    ||||||||||||||||||| ||||||||| ||| ||||| ||| |||||||    
T  31321070 aagatacagggacgaaaaccaaaaacacgcgaacttacagggatgatttaa 31321020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 7653747 - 7653698
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||||||||| |||  || ||||| ||||||||||    
T  7653747 aagatacagggacgaaaacaaaaaatacgccaaattacagggacgattta 7653698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 16673254 - 16673303
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||| |||||||||  || ||||| ||||||||||    
T  16673254 aagatacagggacgaaaaccaaaaacacgcaaaattacagggacgattta 16673303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 36145405 - 36145356
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||||||||| |||  || ||||| ||||||||||    
T  36145405 aagatacagggacgaaaacaaaaaatacgccaaattacagggacgattta 36145356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 7185854 - 7185902
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattt 65  Q
    ||||||||||||||||||||||||||| |  || ||||| |||||||||    
T  7185854 aagatacagggacgaaaacaaaaaacatgcaaacttacaaggacgattt 7185902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 3158035 - 3158084
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  3158035 aagatacagggacgaaaaccaaaaacacgcgaacttacagggacgattta 3158084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 26719446 - 26719397
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    |||||||| |||||||||||||||||||| ||| ||||||||| ||||||    
T  26719446 aagatacaaggacgaaaacaaaaaacacgcgaacttacatggatgattta 26719397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 25265903 - 25265952
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    |||||||||||||||||||||||||||||  || |||||  |||||||||    
T  25265903 aagatacagggacgaaaacaaaaaacacgccaaattacagagacgattta 25265952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 31392119 - 31392070
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||| |||||||||| || ||||| ||||||||||    
T  31392119 aagatacagggacgaaaaccaaaaacacgtcaaattacagggacgattta 31392070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 3704459 - 3704410
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    |||||| |||||||||||| ||||||| | ||| ||||||||||||||||    
T  3704459 aagataaagggacgaaaaccaaaaacaagcgaacttacatggacgattta 3704410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 40028518 - 40028469
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||| |||||||||  || ||||| ||||||||||    
T  40028518 aagatacagggacgaaaaccaaaaacacgccaaattacagggacgattta 40028469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 45277965 - 45278014
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||| |||||||||  || ||||| ||||||||||    
T  45277965 aagatacagggacgaaaaccaaaaacacgccaaattacagggacgattta 45278014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 11671285 - 11671333
Alignment:
Q  18 agatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||| |||||||||||||||||||| ||| ||||  ||||||||||    
T  11671285 agatacatggacgaaaacaaaaaacacgcgaacttacggggacgattta 11671333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 37393940 - 37393901
Alignment:
Q  27 gacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  37393940 gacgaaaacaaaaaacacgtgaacttacatgaacgattta 37393901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 45493030 - 45493073
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggac 60  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||    
T  45493030 aagatacagggacgaaaaccaaaaacacgcgaatttacagggac 45493073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 45500772 - 45500815
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggac 60  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||    
T  45500772 aagatacagggacgaaaaccaaaaacacgcgaatttacagggac 45500815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 22053186 - 22053148
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttaca 55  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  22053186 aagatacagggacgaaaacaaaaaacacgcgaacttaca 22053148  T

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Target: scaffold0512 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 10125 - 10167
Alignment:
Q  20 atacagggacgaaaacaaaaaacacgtgaatttacatggacga 62  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||    
T  10125 atacagggacgaaaacaaaaaatacgcgaatttacaaggacga 10167  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 1256775 - 1256726
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||| |||||||||  || ||||| ||||||||||    
T  1256775 aagatacagggacgaaaaccaaaaacacgccaaattacaaggacgattta 1256726  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 1258438 - 1258487
Alignment:
Q  17 aagatacagggacgaaaacaaaaaacacgtgaatttacatggacgattta 66  Q
    ||||||||||||||||||| |||||||||  || ||||| ||||||||||    
T  1258438 aagatacagggacgaaaaccaaaaacacgccaaattacagggacgattta 1258487  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 1443475 - 1443435
Alignment:
Q  20 atacagggacgaaaacaaaaaacacgtgaatttacatggac 60  Q
    |||||||||||||||| ||||||||||||| ||||| ||||    
T  1443475 atacagggacgaaaaccaaaaacacgtgaacttacagggac 1443435  T

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