View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2877_high_14 (Length: 248)
Name: NF2877_high_14
Description: NF2877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2877_high_14 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 17443567 - 17443799
Alignment:
| Q |
17 |
aatttattcatgatgttgggtgagagtagctctccatgtttggccttatttcttt-ctagtttcacgacatttttgtt-attatccaaatgtacttattt |
114 |
Q |
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| T |
17443567 |
aatttattcatgttgttgggtgagagtagctctccatgtttggcct-atttcttttctagtttcacgacatttttttttattatccaaatgtacttattt |
17443665 |
T |
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| Q |
115 |
tgttcacaacatgcctttgtaaaacagttcagattaataaacgctataaacatgaaacacaagtaaaccatcatattgtcaagttccatcgacatgtatt |
214 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17443666 |
tgttcacaacatgcctttgtaaaatagttcagattaataaacgctataaacatgaaacacaagtaaaccatcatattgtcaagttccatcgacatgtatt |
17443765 |
T |
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| Q |
215 |
taacttctttttgaacaaggcacgacatgtcttt |
248 |
Q |
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| T |
17443766 |
taacttctttttgaacaaggcacgacatgtcttt |
17443799 |
T |
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