View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2877_high_17 (Length: 239)
Name: NF2877_high_17
Description: NF2877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2877_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 5 - 160
Target Start/End: Original strand, 47000880 - 47001034
Alignment:
| Q |
5 |
ggttgggactaaaattacaataaatgtgaaaataaagacaccaaaaagttcgattgaggactattttcgtgaatttaaataaaataggagaaccattaag |
104 |
Q |
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| T |
47000880 |
ggttgggactaaaattacaataaatgtgaaaataaagacaccaaaaagttcgattgaggactattttcgtgaatttaa-taaaataggagaaccattaag |
47000978 |
T |
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| Q |
105 |
cataatataagagatcaattttatcttcttaagaagaggatgtgaataaataaata |
160 |
Q |
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| T |
47000979 |
cataatataagagatcaattttatcttcttaagaagaggatgtgaataaataaata |
47001034 |
T |
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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 47001034 - 47001087
Alignment:
| Q |
186 |
ataaaaagttactgtgaatgatgaaatctaagagtgtaatggacttgtcaaaat |
239 |
Q |
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| T |
47001034 |
ataaaaatttactgtgaatgatgaaatctaagagtgtaatggacttgtcaaaat |
47001087 |
T |
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