View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2877_high_3 (Length: 418)
Name: NF2877_high_3
Description: NF2877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2877_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 4 - 402
Target Start/End: Complemental strand, 20902217 - 20901821
Alignment:
| Q |
4 |
gctaatctttgcaaagtacgaaggctctttgaaggattgcctatcaagcttggagtatctgaagaatctgataaagcaatatttagtcacacctctagga |
103 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20902217 |
gctaatctttgcaaagtacgaagactctttgaaggattgcctatcaagcttggagtatctgaagaatctgataaagcaatatttagtcacacctatagga |
20902118 |
T |
|
| Q |
104 |
aatggagtattcaaaccattttttagacaaagcaatannnnnnnaggacaggctactgcgttttttatggcattttgagacggggatgtggtaatgtcat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20902117 |
aatggagtattcaaaccattttttagac--agcaat---tttttaggacaggctgctgcgttttttatggcattttgagacggggatgtggtaatgtcat |
20902023 |
T |
|
| Q |
204 |
aatttggaatactatctttgttctctttatgccgtagtctaga---nnnnnnnncttcttagttgcgacatattggttgctgcaaagtattctctgttat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20902022 |
aatttggaatactatctttgttctctttatgccgtactctagattttttttcttcttcttagttgcgacatattggttgctgcaaagtattctctgttat |
20901923 |
T |
|
| Q |
301 |
tggaatgatgtannnnnnnnatatctttgttgcaacatggttcattctgagatcagtcaagtccatatgactgagcagttctgagaaccatgatcttaga |
400 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
20901922 |
tggaatgatgtactttttttatatctttgttgcaacatggttcattctgagatcagtcaagtccatatgactgagcagttatgagaaccctgatcttaga |
20901823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 7605579 - 7605532
Alignment:
| Q |
86 |
ttagtcacacctctaggaaatggagtattcaaacc-attttttagaca |
132 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
7605579 |
ttagtcacacctataggaaatggagtattcaaacctcttttttagaca |
7605532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 31769133 - 31769086
Alignment:
| Q |
86 |
ttagtcacacctctaggaaatggagtattcaaacc-attttttagaca |
132 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
31769133 |
ttagtcacacctataggaaatggagtattcaaacctcttttttagaca |
31769086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 7605697 - 7605645
Alignment:
| Q |
5 |
ctaatctttgcaaagtacgaaggctctttgaaggattgcctatcaagcttgga |
57 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
7605697 |
ctaatttttgcaaacaacgaaggttctttgaaggattgtctatcaagtttgga |
7605645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 14186650 - 14186702
Alignment:
| Q |
5 |
ctaatctttgcaaagtacgaaggctctttgaaggattgcctatcaagcttgga |
57 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
14186650 |
ctaatttttgcaaacaacgaaggttctttgaaggattgtctatcaagtttgga |
14186702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 31769251 - 31769199
Alignment:
| Q |
5 |
ctaatctttgcaaagtacgaaggctctttgaaggattgcctatcaagcttgga |
57 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
31769251 |
ctaatttttgcaaacaacgaaggttctttgaaggattgtctatcaagtttgga |
31769199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 41812706 - 41812758
Alignment:
| Q |
5 |
ctaatctttgcaaagtacgaaggctctttgaaggattgcctatcaagcttgga |
57 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
41812706 |
ctaatttttgcaaacaacgaaggttctttgaaggattgtctatcaagtttgga |
41812758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University