View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2877_high_4 (Length: 409)
Name: NF2877_high_4
Description: NF2877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2877_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 19166879 - 19166472
Alignment:
| Q |
18 |
gtatcaaaccccgcatcctccacacgttgctgtattgataccaacgtttcctcgtgctaaccgttgccaccaaacctgaaacggcccaatctctgtcttc |
117 |
Q |
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| T |
19166879 |
gtatcaaaccccgcatcctccacacgttg---tattgataccaacgtttcctcgtgctaaccgttgccaccaaacctgaaccggcccaatctctgtcttc |
19166783 |
T |
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| Q |
118 |
ttcagcaaactggtactcaatcacccccttattaatcaaattgccctctgaaccagtcagtacaaagttctcaggttgttccaaatcctcatccaattcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19166782 |
ttcagcaaactggtactcaatcacccccttattaatcaaattgccctctgaaccagtcagtacaaagttctcaggttgttccaaatcctcatccaaatcg |
19166683 |
T |
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| Q |
218 |
acggattt---------------------aatagtaaggacgacgacttccttgttctttggaactgccatccctccggcaccctccttcaataactgtg |
296 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19166682 |
acggatttaataaccttcccgtcgtcagcaatagtaaggacgacgacttccttgttctttggaactgccatccctccggcaccctccttcaataaccgtg |
19166583 |
T |
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| Q |
297 |
tctgctgcccatcata-ccccatccgaacctccttctcagctccactgtcaccgttatccctcaccacgcctttcctgaacctcacactttttctccctc |
395 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19166582 |
tctgctgcccatcatacccccatcagaacctccttctcagccccactatcaccgttatccctcaccacgcctttcctgaacctcgcactttttctccctc |
19166483 |
T |
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| Q |
396 |
cccgcttcttc |
406 |
Q |
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| T |
19166482 |
cccgcttcttc |
19166472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19166936 - 19166899
Alignment:
| Q |
1 |
accattatcacggcaacgtatcaaaccccgcatcctcc |
38 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
19166936 |
accattatcacggcaacgtatcaaaccccgcatcctcc |
19166899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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