View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2877_high_5 (Length: 351)
Name: NF2877_high_5
Description: NF2877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2877_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 16068217 - 16067899
Alignment:
| Q |
11 |
atgaatgaataaaaaatgaaccctagaaatgaagagggggttttccatggagtttagctcaacaccaagtaacatactatatcaaaaaccaaaccaatca |
110 |
Q |
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| T |
16068217 |
atgaatgaataaaaaatgaaccctagaaatgaagagggggttttccatggagtttagctcaacaccaagtaacatactatatcaaaaaccaaaccaatca |
16068118 |
T |
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| Q |
111 |
agtaacgaagaaatagaaagttaaggtatatgtgggagaaatgatgggtacgccaacattcttaataggttaaaacatgcatgaccatttgacacaataa |
210 |
Q |
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| T |
16068117 |
agtaacgaagaaatagaaagttaaggtacatgtgggagaaatgatgggtacgccaacattcttaataggttaaaacatgcatgaccatttgacacaataa |
16068018 |
T |
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| Q |
211 |
ataaagagctaagttgaatcaaactatgaattagaataaataatcaatagagtatagagataagtaaaataagatcataagtactaacaattgcatatgg |
310 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16068017 |
ataaagagctaatttgaatcaaactaagaattagaataaataatcaatagagtatagagataagtaaaataagatcataagtactaacaattgcatatgg |
16067918 |
T |
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| Q |
311 |
ttagagtatagattaactt |
329 |
Q |
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| T |
16067917 |
ttagagtatagattaactt |
16067899 |
T |
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