View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2877_high_6 (Length: 347)
Name: NF2877_high_6
Description: NF2877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2877_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 25160015 - 25159827
Alignment:
| Q |
1 |
gtgtacaagaaaaagtataaagaatctcaaaagggtgtaataggcataaccttagtagcgaattggtatcttccactctcagattccaaatccgaccaaa |
100 |
Q |
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| T |
25160015 |
gtgtacaagaaaaagtataaagaatctcaaaagggtgtaataggcataaccttagtaacgaattggtatcttccactctcagattccaaatccgaccaaa |
25159916 |
T |
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| Q |
101 |
aagcagcagaaagagcaattgattttatgtatggatggtaagaactcatatataactctttccatttttatttatcttcaaaaggaaac |
189 |
Q |
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| T |
25159915 |
aagcagcagaaagagcaattgattttatgtatggatggtaagaactcatctataactctttccatttttatttatcttcaaaaggaaac |
25159827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 245 - 347
Target Start/End: Complemental strand, 25159771 - 25159669
Alignment:
| Q |
245 |
caggtttatggatccactaacatcaggagattatcccaaaagcatgagagccctcgttggtgctaggttaccaaaattcaatacaatgcaaactaaacta |
344 |
Q |
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| T |
25159771 |
caggtttatggatccactaacatcaggagattatcccaaaagcatgagagccctcgttggttctaggttaccaaaattcaatacaatgcaaactaaacta |
25159672 |
T |
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| Q |
345 |
ctc |
347 |
Q |
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||| |
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| T |
25159671 |
ctc |
25159669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 9214119 - 9214236
Alignment:
| Q |
26 |
ctcaaaagggtgtaataggcataaccttagtagcgaattggtatcttccactctcagattccaaatccgaccaaaaagcagcagaaagagcaattgattt |
125 |
Q |
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| T |
9214119 |
ctcaaaatggtgtaataggaataaccttggtagctaactggtacctgccactctcagattcgaaatccgaccagaaagctgctgaaagagctgttgactt |
9214218 |
T |
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| Q |
126 |
tatgtatggatggtaaga |
143 |
Q |
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||||||||||||||||| |
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| T |
9214219 |
catgtatggatggtaaga |
9214236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 9214470 - 9214551
Alignment:
| Q |
245 |
caggtttatggatccactaacatcaggagattatcccaaaagcatgagagccctcgttggtgctaggttaccaaaattcaat |
326 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| || || ||||||||||||||| |
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| T |
9214470 |
caggtttatggatccactaacatcaggagattatccaaaaagcatgagatcccttgttggagcaagattaccaaaattcaat |
9214551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 53
Target Start/End: Complemental strand, 42166961 - 42166930
Alignment:
| Q |
22 |
gaatctcaaaagggtgtaataggcataacctt |
53 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
42166961 |
gaatctcaaaagggtgtaataggcataacctt |
42166930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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