View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2877_low_13 (Length: 258)
Name: NF2877_low_13
Description: NF2877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2877_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 35892707 - 35892937
Alignment:
| Q |
18 |
acaagatcataatatgattacatatagattatttattatgaaacagtgtcaactcagaggctagaagaggaccagctagcatcaacagcatctatgatct |
117 |
Q |
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| T |
35892707 |
acaagatcataatatgattacatatagattatttattatgaaacagtttcaactcagaggctagaagaggaccaactagcatcaacagcatctatgatct |
35892806 |
T |
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| Q |
118 |
tttcatgtaatgtggatccagcacaagcaactataccacgatcaagtcctcgtaagtatgagcctttagagaagtccaaggaacgtcccctaacatctgt |
217 |
Q |
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| T |
35892807 |
tttcatgtaatgtggatccagcacaagcaactataccacgatcaagtcctcgtaagtatgagcctttagagaagtccaaggaacgtcccctaacatctgt |
35892906 |
T |
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| Q |
218 |
tactgtgcctcctgcctcttgtatgatgatg |
248 |
Q |
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| T |
35892907 |
tactgtgcctcctgcctcttgtatgatgatg |
35892937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 3113429 - 3113358
Alignment:
| Q |
89 |
ccagctagcatcaacagcatctatgatcttttcatgtaatgtggatccagcacaagcaactataccacgatc |
160 |
Q |
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||||||||||||||||||||| ||||||||| |||| |||| || ||||| |||||||| |||||| ||||| |
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| T |
3113429 |
ccagctagcatcaacagcatcaatgatctttccatgcaatgaggctccagaacaagcaattataccgcgatc |
3113358 |
T |
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