View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2877_low_15 (Length: 248)
Name: NF2877_low_15
Description: NF2877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2877_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 31530922 - 31531153
Alignment:
| Q |
1 |
tgcaagtgagaactcaaaatcttcaaaccctgaactcaacttttgcaaaagagcttgaattgctctatgaaacacaatagcaaaatcattcaatgccttc |
100 |
Q |
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| T |
31530922 |
tgcaagtgagaactcaaaatcttcaaaccctgaactcaacttttgcaaaagagcttgaattgctctatgaaacacaatagcaaaatcattcaatggcttc |
31531021 |
T |
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| Q |
101 |
acacaattccctccattaccagaggttactgcaggacaacaccctataggtgcaacacttagaatgccaaattttctagcccctaattcatatagattct |
200 |
Q |
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| T |
31531022 |
acacaattccctccattaccagaggttactgcaggacaacaccctataggtgcaacacttaggatgccaaattttctagcccctaattcatatagattct |
31531121 |
T |
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| Q |
201 |
gcaatatattatccaatacacaaagttataaa |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31531122 |
gcaatatattatccaatacacaaagttataaa |
31531153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 203
Target Start/End: Complemental strand, 31537427 - 31537303
Alignment:
| Q |
79 |
agcaaaatcattcaatgccttcacacaattccctccattaccagaggttactgcaggacaacaccctataggtgcaacacttagaatgccaaattttcta |
178 |
Q |
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| T |
31537427 |
agcaaaatcatttagtggtttcacacaattccctccattggtagaagttacaactggataacatcctattggtggaatgcttaggatgccgaattttcga |
31537328 |
T |
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| Q |
179 |
gcccctaattcatatagattctgca |
203 |
Q |
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|||||||||||||| || ||||||| |
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| T |
31537327 |
gcccctaattcatacagtttctgca |
31537303 |
T |
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