View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2877_low_18 (Length: 241)

Name: NF2877_low_18
Description: NF2877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2877_low_18
NF2877_low_18
[»] chr2 (7 HSPs)
chr2 (19-241)||(15645787-15646009)
chr2 (36-237)||(15654958-15655157)
chr2 (36-225)||(15625409-15625598)
chr2 (90-225)||(15494077-15494212)
chr2 (109-215)||(15534698-15534804)
chr2 (109-206)||(15517883-15517980)
chr2 (177-239)||(15605613-15605675)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 15645787 - 15646009
Alignment:
Q  19 ttatttatagtggaacggaataggataagtgtggaagtagctcgcttttaatttctcaataaaatgaataaaaaagggttgcattgcatgtacctcaaac 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15645787 ttatttatagtggaatggaataggataagtgtggaagtagctcgcttttaatttctcaataaaatgaataaaaaagggttgcattgcatgtacctcaaac 15645886  T
Q  119 catagtaactcgacacacatttgaaaagcagctccagaaaccaattcaagttgacttcgtggtgctaattttgcagccaagtgcaatagtgtgtttctgt 218  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15645887 catagtaactcgacgcacatttgaaaagcagctccagaaaccaattcaagttgatttcgtggtgctaattttgcagccaagtgcaatagtgtgtttctgt 15645986  T
Q  219 catcatcattttcatatgtcact 241  Q
    |||||||||||||||||||||||    
T  15645987 catcatcattttcatatgtcact 15646009  T

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Target: chr2; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 36 - 237
Target Start/End: Original strand, 15654958 - 15655157
Alignment:
Q  36 gaataggataagtgtggaagtagctcgcttttaatttctcaataaaatgaataaaaaagggttgcattgcatgtacctcaaaccatagtaactcgacaca 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||| ||||||||| ||    
T  15654958 gaataggataagtgtggaagtagctcgcttttaatttctcaataaaatgat--aaaaagagttgcattgcatgtacctcaaaccatactaactcgacgca 15655055  T
Q  136 catttgaaaagcagctccagaaaccaattcaagttgacttcgtggtgctaattttgcagccaagtgcaatagtgtgtttctgtcatcatcattttcatat 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||| |||||||    
T  15655056 catttgaaaagcagctccagaaaccaattcaagttgacttcgtggtgctaattttgcagccaagtgcaataaagtgtttctgtcattatcatcttcatat 15655155  T

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Target: chr2; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 36 - 225
Target Start/End: Original strand, 15625409 - 15625598
Alignment:
Q  36 gaataggataagtgtggaagtagctcgcttttaatttctcaataaaatgaataaaaaagggttgcattgcatgtacctcaaaccatagtaactcgacaca 135  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |  ||    
T  15625409 gaataggataagtgtggaagtagcttgcttttaatttctcaataaaatgaataaaaaagggttgcattgcatgtacctcaaaccataataactcaaggca 15625508  T
Q  136 catttgaaaagcagctccagaaaccaattcaagttgacttcgtggtgctaattttgcagccaagtgcaatagtgtgtttctgtcatcatc 225  Q
    |||||||||||| |  |||||||||||||||||||||  | ||||||||||||||||||||||||||||||  |||||||||||||||||    
T  15625509 catttgaaaagctgacccagaaaccaattcaagttgaacttgtggtgctaattttgcagccaagtgcaataaagtgtttctgtcatcatc 15625598  T

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Target: chr2; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 15494077 - 15494212
Alignment:
Q  90 aaaagggttgcattgcatgtacctcaaaccatagtaactcgacacacatttgaaaagcagctccagaaaccaattcaagttgacttcgtggtgctaattt 189  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||    
T  15494077 aaaacggttgcattacatgtacctcaaaccatactaactcgacacacatttgaaaagctgctccagaaaccaattcaagttgacctcgtcgtgctaattt 15494176  T
Q  190 tgcagccaagtgcaatagtgtgtttctgtcatcatc 225  Q
    |||||||||||| ||||  ||||||||||| |||||    
T  15494177 tgcagccaagtgtaatatagtgtttctgtcttcatc 15494212  T

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Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 109 - 215
Target Start/End: Original strand, 15534698 - 15534804
Alignment:
Q  109 tacctcaaaccatagtaactcgacacacatttgaaaagcagctccagaaaccaattcaagttgacttcgtggtgctaattttgcagccaagtgcaatagt 208  Q
    |||||||||||||| |||||| |  |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||      
T  15534698 tacctcaaaccataataactcaaggcacatttgaaaagctgctccagaaaccaattcaagttgacctcgtggtgctaattttgcagccaagtgcaataaa 15534797  T
Q  209 gtgtttc 215  Q
    |||||||    
T  15534798 gtgtttc 15534804  T

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Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 15517883 - 15517980
Alignment:
Q  109 tacctcaaaccatagtaactcgacacacatttgaaaagcagctccagaaaccaattcaagttgacttcgtggtgctaattttgcagccaagtgcaata 206  Q
    |||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||| | |||||||||||||| |||| ||||||||||    
T  15517883 tacctcaaaccataataactcgacacacatttgaaaagctgcaccagaaaccaattcaagttgaccttgtggtgctaattttccagctaagtgcaata 15517980  T

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Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 15605613 - 15605675
Alignment:
Q  177 gtggtgctaattttgcagccaagtgcaatagtgtgtttctgtcatcatcattttcatatgtca 239  Q
    ||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||    
T  15605613 gtggtgctaattttgcagccaagtgcaataaagtgtttctgtcttcatcattttcatatgtca 15605675  T

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