View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2877_low_2 (Length: 543)

Name: NF2877_low_2
Description: NF2877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2877_low_2
NF2877_low_2
[»] chr1 (23 HSPs)
chr1 (19-530)||(9495210-9495721)
chr1 (96-364)||(10992853-10993121)
chr1 (96-364)||(10930649-10930917)
chr1 (96-388)||(11040988-11041280)
chr1 (96-343)||(10906789-10907034)
chr1 (96-388)||(11026285-11026577)
chr1 (87-178)||(9378002-9378093)
chr1 (78-178)||(9300378-9300478)
chr1 (122-394)||(9337606-9337878)
chr1 (71-178)||(9236124-9236231)
chr1 (122-394)||(9364465-9364737)
chr1 (87-378)||(9466466-9466757)
chr1 (71-181)||(8927232-8927342)
chr1 (69-130)||(9085921-9085982)
chr1 (71-394)||(9242256-9242579)
chr1 (291-394)||(9300162-9300265)
chr1 (339-394)||(9420670-9420725)
chr1 (339-394)||(9437753-9437808)
chr1 (71-205)||(8962561-8962695)
chr1 (69-130)||(9069625-9069686)
chr1 (285-394)||(9257439-9257548)
chr1 (426-454)||(9242611-9242639)
chr1 (426-454)||(9257580-9257608)
[»] chr4 (2 HSPs)
chr4 (112-370)||(27696125-27696383)
chr4 (429-526)||(27695969-27696066)
[»] chr3 (1 HSPs)
chr3 (282-394)||(9171571-9171683)
[»] chr6 (4 HSPs)
chr6 (87-132)||(30961158-30961203)
chr6 (87-132)||(30992640-30992685)
chr6 (87-132)||(31145383-31145428)
chr6 (87-132)||(31171696-31171741)


Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 19 - 530
Target Start/End: Complemental strand, 9495721 - 9495210
Alignment:
Q  19 aaatccattccggaaaataccctaaaccacttctcgtctctacaacatcgacattctgtcttcccccgaccatctctagcaacaacattccaaaactata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9495721 aaatccattccggaaaataccctaaaccacttctcgtctctacaacatcgacattctgtcttcccccgaccatctctagcaacaacattccaaaactata 9495622  T
Q  119 aacatcagacttgtacgacacatttccaaagttcctagagaaaacttctggtgctatgtaaccaatagtccccctagccgcggtcatggaaaccgcactt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9495621 aacatcagacttgtacgacacatttccaaagttcctagagaaaacttctggtgctatgtaaccaatagtccccctagccgcggtcatggaaaccgcactt 9495522  T
Q  219 tgatcctttgaacaaagcttagccagaccaaaatcagatatcttgggagtgaagttattgtcaagtaagatattatgaggttttatatcaaagtgaagta 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9495521 tgatcctttgaacaaagcttagccagaccaaaatcagatatcttgggagtgaagttattgtcaagtaagatattatgaggttttatatcaaagtgaagta 9495422  T
Q  319 tcctctggtcacatccttgatgaagatactcaattcctttcgctattccaagcgcaatttcttgtaacttctcccaactcaaaaagtggtttttgaaatc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9495421 tcctctggtcacatccttgatgaagatactcaattcctttcgctattccaagcgcaatttcttgtaacttctcccaactcaaaaagtggtttttgaaatc 9495322  T
Q  419 cgttgtggaaatgaatttctgcaacgaaccatttggtaaatactcgtacacaagagctcgtgtgtgtccatcggcacaaaagccaactaagtgaacaaca 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9495321 cgttgtggaaatgaatttctgcaacgaaccatttggtaaatactcgtacacaagagctcgtgtgtgtccatcggcacaaaagccaactaagtgaacaaca 9495222  T
Q  519 ttgacgtgatga 530  Q
    ||||||||||||    
T  9495221 ttgacgtgatga 9495210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 96 - 364
Target Start/End: Complemental strand, 10993121 - 10992853
Alignment:
Q  96 agcaacaacattccaaaactataaacatcagacttgtacgacacatttccaaagttcctagagaaaacttctggtgctatgtaaccaatagtccccctag 195  Q
    ||||||| ||||||| ||||||||||||| || ||||| |||||||||||||||||||| || ||||||||||| || ||||| || |  || || ||||    
T  10993121 agcaacatcattccataactataaacatctgatttgtaagacacatttccaaagttccttgaaaaaacttctggagcaatgtaccccaatgttcctctag 10993022  T
Q  196 ccgcggtcatggaaaccgcactttgatcctttgaacaaagcttagccagaccaaaatcagatatcttgggagtgaagttattgtcaagtaagatattatg 295  Q
    | |||||||| |||||  | ||||| ||| ||||||| |  ||||| |||||||| |||||||| || ||| ||||||||| ||||||||| | ||| ||    
T  10993021 ctgcggtcattgaaactacgctttggtcccttgaacataatttagctagaccaaagtcagatatttttggaatgaagttatggtcaagtaacacattttg 10992922  T
Q  296 aggttttatatcaaagtgaagtatcctctggtcacatccttgatgaagatactcaattcctttcgctat 364  Q
     ||||| |||||||| ||||| || |  || ||||| ||||||||||||||||||| |||||| |||||    
T  10992921 tggtttgatatcaaaatgaaggatgcgttgatcacaaccttgatgaagatactcaactcctttagctat 10992853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 96 - 364
Target Start/End: Complemental strand, 10930917 - 10930649
Alignment:
Q  96 agcaacaacattccaaaactataaacatcagacttgtacgacacatttccaaagttcctagagaaaacttctggtgctatgtaaccaatagtccccctag 195  Q
    ||||||| ||||||| ||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||| || ||||| || | ||| || ||||    
T  10930917 agcaacatcattccataactataaacatctgatttgtaagacacatttccaaagttccttgagaaaacttctggagcaatgtagcccaaagttcctctag 10930818  T
Q  196 ccgcggtcatggaaaccgcactttgatcctttgaacaaagcttagccagaccaaaatcagatatcttgggagtgaagttattgtcaagtaagatattatg 295  Q
    | || ||||| || ||    ||||| ||| ||||||| |  ||||| |||||||| ||||||||||| ||| | ||||||| ||||||||| | ||| ||    
T  10930817 ctgctgtcattgacactatgctttggtcccttgaacataatttagctagaccaaagtcagatatctttggaataaagttatggtcaagtaacacattttg 10930718  T
Q  296 aggttttatatcaaagtgaagtatcctctggtcacatccttgatgaagatactcaattcctttcgctat 364  Q
     ||||| ||||| || || |  || |  |||||||| ||||||||||||||||||| |||||| |||||    
T  10930717 tggtttgatatcgaaatggacgatgcgttggtcacaaccttgatgaagatactcaactcctttagctat 10930649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 96 - 388
Target Start/End: Complemental strand, 11041280 - 11040988
Alignment:
Q  96 agcaacaacattccaaaactataaacatcagacttgtacgacacatttccaaagttcctagagaaaacttctggtgctatgtaaccaatagtccccctag 195  Q
    ||||||| ||||||| ||||||||||||| || ||| | ||||| |||||||||||||| || ||||||||||| || ||||| || | ||| || ||||    
T  11041280 agcaacatcattccataactataaacatccgatttgaaagacacgtttccaaagttccttgaaaaaacttctggagcaatgtagcccaaagttcctctag 11041181  T
Q  196 ccgcggtcatggaaaccgcactttgatcctttgaacaaagcttagccagaccaaaatcagatatcttgggagtgaagttattgtcaagtaagatattatg 295  Q
    |||||||||| || ||    || |||||| ||||||| |  ||||| |||||||||||| |||| || ||| | ||||| | ||||||||| | ||| ||    
T  11041180 ccgcggtcattgacactatgctctgatcccttgaacataatttagctagaccaaaatcacatatttttggaataaagttgtggtcaagtaacacattttg 11041081  T
Q  296 aggttttatatcaaagtgaagtatcctctggtcacatccttgatgaagatactcaattcctttcgctattccaagcgcaatttcttgtaactt 388  Q
     || || |||||||| || || || |  || ||||| |||||||||||||| ||||||||||| |||||||| |  |||||||| || |||||    
T  11041080 tggcttgatatcaaaatggaggatgcgttgatcacaaccttgatgaagatattcaattcctttagctattcctaaagcaatttcgtgcaactt 11040988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 96 - 343
Target Start/End: Complemental strand, 10907034 - 10906789
Alignment:
Q  96 agcaacaacattccaaaactataaacatcagacttgtacgacacatttccaaagttcctagagaaaacttctggtgctatgtaaccaatagtccccctag 195  Q
    ||||||| ||||||| ||||||||||||| || ||||| |||||||||||||||||||| || ||||||||||| || ||||| || |  || || ||||    
T  10907034 agcaacatcattccataactataaacatctgatttgtaagacacatttccaaagttccttgaaaaaacttctggagcaatgtaccccaatgttcctctag 10906935  T
Q  196 ccgcggtcatggaaaccgcactttgatcctttgaacaaagcttagccagaccaaaatcagatatcttgggagtgaagttattgtcaagtaagatattatg 295  Q
    | |||||||| |||||  | ||||| ||| ||||||| |  ||||| |||||||| |||||||| || |||   ||||||| ||||||||| | ||| ||    
T  10906934 ctgcggtcattgaaactacgctttggtcccttgaacataatttagctagaccaaagtcagatatttttgga--aaagttatggtcaagtaacacattttg 10906837  T
Q  296 aggttttatatcaaagtgaagtatcctctggtcacatccttgatgaag 343  Q
     ||||| |||||||| ||||| || |  || ||||| |||||||||||    
T  10906836 tggtttgatatcaaaatgaaggatgcgttgatcacaaccttgatgaag 10906789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 388
Target Start/End: Complemental strand, 11026577 - 11026285
Alignment:
Q  96 agcaacaacattccaaaactataaacatcagacttgtacgacacatttccaaagttcctagagaaaacttctggtgctatgtaaccaatagtccccctag 195  Q
    ||||||| ||||||| |||| |||||||| || ||||| ||||||||||| |||||||| || ||||||||||| || ||||| || |  || || ||||    
T  11026577 agcaacatcattccataactgtaaacatctgatttgtaagacacatttccgaagttccttgaaaaaacttctggagcaatgtaccccaatgttcctctag 11026478  T
Q  196 ccgcggtcatggaaaccgcactttgatcctttgaacaaagcttagccagaccaaaatcagatatcttgggagtgaagttattgtcaagtaagatattatg 295  Q
    | || ||||| || ||    || |||||| ||||||| |  ||||| |||||||| |||||||| || ||| | ||||||| ||||||||| | ||| ||    
T  11026477 ctgcagtcattgatactatgctctgatcccttgaacataatttagctagaccaaagtcagatatttttggaataaagttatggtcaagtaacacattttg 11026378  T
Q  296 aggttttatatcaaagtgaagtatcctctggtcacatccttgatgaagatactcaattcctttcgctattccaagcgcaatttcttgtaactt 388  Q
     || || ||||| || || || || |  || ||||| |||||||||||||| ||||||||||| |||||||| |  |||||||| || |||||    
T  11026377 tggcttgatatcgaaatggaggatgcgttgatcacaaccttgatgaagatattcaattcctttagctattcctaaagcaatttcgtgcaactt 11026285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 9378093 - 9378002
Alignment:
Q  87 accatctctagcaacaacattccaaaactataaacatcagacttgtacgacacatttccaaagttcctagagaaaacttctggtgctatgta 178  Q
    ||||||||||||||||| |||||  | ||||||| |||||||||||| || |||||||| ||||| || ||||||||||| ||||| |||||    
T  9378093 accatctctagcaacaatattccgtagctataaatatcagacttgtaagaaacatttccgaagtttcttgagaaaacttcaggtgcaatgta 9378002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 9300478 - 9300378
Alignment:
Q  78 cttcccccgaccatctctagcaacaacattccaaaactataaacatcagacttgtacgacacatttccaaagttcctagagaaaacttctggtgctatgt 177  Q
    |||||||| |||||||| ||||||||||| ||| ||||||| | ||| ||||| || || ||||| |||||||| ||||| |||||||| ||||| ||||    
T  9300478 cttcccccaaccatctccagcaacaacatgccataactatatatatcggacttataagagacattcccaaagtttctagaaaaaacttcgggtgccatgt 9300379  T
Q  178 a 178  Q
    |    
T  9300378 a 9300378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 122 - 394
Target Start/End: Complemental strand, 9337878 - 9337606
Alignment:
Q  122 atcagacttgtacgacacatttccaaagttcctagagaaaacttctggtgctatgtaaccaatagtccccctagccgcggtcatggaaaccgcactttga 221  Q
    ||||||||| || || ||||| |||||||| || || |||||||| ||||| ||||| || |  || ||| |||| || |||||||| ||  ||||||||    
T  9337878 atcagacttataagagacattaccaaagtttcttgaaaaaacttcaggtgccatgtagcctaatgttcccttagctgcagtcatggatacgacactttga 9337779  T
Q  222 tcctttgaacaaagcttagccagaccaaaatcagatatcttgggagtgaagttattgtcaagtaagatattatgaggttttatatcaaagtgaagtatcc 321  Q
    |  |||||||| | ||| |||| ||||||||| |  || ||||||||||| || |  || |  |||| ||||||||| || || |||||||| || || |    
T  9337778 ttttttgaacatatcttggccaaaccaaaatctgtaattttgggagtgaaattgtcatctaacaagacattatgaggattgatgtcaaagtgtagaattc 9337679  T
Q  322 tctggtcacatccttgatgaagatactcaattcctttcgctattccaagcgcaatttcttgtaacttctccca 394  Q
    | || ||||| ||||| || ||||||||||| || || ||||| || || ||||||| ||| ||||| |||||    
T  9337678 tttgatcacaaccttggtggagatactcaataccatttgctatgcctagagcaattttttgcaacttatccca 9337606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 178
Target Start/End: Original strand, 9236124 - 9236231
Alignment:
Q  71 attctgtcttcccccgaccatctctagcaacaacattccaaaactataaacatcagacttgtacgacacatttccaaagttcctagagaaaacttctggt 170  Q
    ||||| |||||| || |||||||| ||||||||||| ||  | ||||||| ||||||||| || || |||||||| ||||| || ||||||||||| |||    
T  9236124 attctttcttccaccaaccatctcaagcaacaacataccgtagctataaatatcagacttataagaaacatttccgaagtttctcgagaaaacttcaggt 9236223  T
Q  171 gctatgta 178  Q
    || |||||    
T  9236224 gcaatgta 9236231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 394
Target Start/End: Complemental strand, 9364737 - 9364465
Alignment:
Q  122 atcagacttgtacgacacatttccaaagttcctagagaaaacttctggtgctatgtaaccaatagtccccctagccgcggtcatggaaaccgcactttga 221  Q
    ||||||||| || || ||||| |||||||| || || |||||||| ||||| ||||| || |  || ||| |||| || |||||||| ||   |||||||    
T  9364737 atcagacttataagagacattaccaaagtttcttgaaaaaacttcaggtgccatgtagcctaatgttcccttagctgcagtcatggatacgatactttga 9364638  T
Q  222 tcctttgaacaaagcttagccagaccaaaatcagatatcttgggagtgaagttattgtcaagtaagatattatgaggttttatatcaaagtgaagtatcc 321  Q
    |  |||||||| | ||| |||| ||||||||| |  || ||||||||||| || |  || |  |||| ||||||||| || || |||||||| || || |    
T  9364637 ttttttgaacatatcttggccaaaccaaaatctgtaattttgggagtgaaattgtcatctaacaagacattatgaggattgatgtcaaagtgtagaattc 9364538  T
Q  322 tctggtcacatccttgatgaagatactcaattcctttcgctattccaagcgcaatttcttgtaacttctccca 394  Q
    | || ||||| ||||| || ||||||||||| || || ||||| || || ||||||| ||| ||||| |||||    
T  9364537 tttgatcacaaccttggtggagatactcaataccatttgctatgcctagagcaattttttgcaacttatccca 9364465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 378
Target Start/End: Original strand, 9466466 - 9466757
Alignment:
Q  87 accatctctagcaacaacattccaaaactataaacatcagacttgtacgacacatttccaaagttcctagagaaaacttctggtgctatgtaaccaatag 186  Q
    |||||||| | ||||||||| ||| ||||||| | ||||||||| || || ||||| || ||||| ||||| |||||||| ||||| ||||| || |  |    
T  9466466 accatctccaacaacaacataccataactatatatatcagacttatatgagacattcccgaagtttctagaaaaaacttcgggtgccatgtagcctaacg 9466565  T
Q  187 tccccctagccgcggtcatggaaaccgcactttgatcctttgaacaaagcttagccagaccaaaatcagatatcttgggagtgaagttattgtcaagtaa 286  Q
    | ||  | || |||||||| || || | |||| |||  || || || | |||||||| ||| || || |  || ||||||||||| || |  || |  ||    
T  9466566 ttcctttggctgcggtcatagacactgtacttcgatttttcgagcacatcttagccaaaccgaagtctgtaattttgggagtgaaattctcatctaacaa 9466665  T
Q  287 gatattatgaggttttatatcaaagtgaagtatcctctggtcacatccttgatgaagatactcaattcctttcgctattccaagcgcaattt 378  Q
    || ||||||||| || || ||||||||||| || || || ||||| ||||| ||||||||||||||||| || ||||| || || |||||||    
T  9466666 gacattatgaggattgatgtcaaagtgaagaattctttgatcacaaccttggtgaagatactcaattccattggctatgcctagagcaattt 9466757  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 8927342 - 8927232
Alignment:
Q  71 attctgtcttcccccgaccatctctagcaacaacattccaaaactataaacatcagacttgtacgacacatttccaaagttcctagagaaaacttctggt 170  Q
    ||||| |||||| || |||||||||||||||||||| ||  | || || | ||||||||| || || ||||| |||||||| | ||| |||||||| |||    
T  8927342 attctttcttcctccaaccatctctagcaacaacataccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaacttcaggt 8927243  T
Q  171 gctatgtaacc 181  Q
    || ||||||||    
T  8927242 gccatgtaacc 8927232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 9085921 - 9085982
Alignment:
Q  69 acattctgtcttcccccgaccatctctagcaacaacattccaaaactataaacatcagactt 130  Q
    |||||||  ||||| || |||||||||||||||||||| ||| ||||||||| |||||||||    
T  9085921 acattcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagactt 9085982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 394
Target Start/End: Original strand, 9242256 - 9242579
Alignment:
Q  71 attctgtcttcccccgaccatctctagcaacaacattccaaaactataaacatcagacttgtacgacacatttccaaagttcctagagaaaacttctggt 170  Q
    ||||| |||||| || |||||||| | ||| ||||| ||  |||| || ||||| ||||| || || ||||||||||| || ||||| |||||||| |||    
T  9242256 attctttcttcctccaaccatctccaacaataacataccgtaactgtatacatcggacttataagagacatttccaaaatttctagaaaaaacttcaggt 9242355  T
Q  171 gctatgtaaccaatagtccccctagccgcggtcatggaaaccgcactttgatcctttgaacaaagcttagccagaccaaaatcagatatcttgggagtga 270  Q
    || ||||| || |  || ||| ||||||| |||||||| ||   ||||||||  || ||||| | ||| |||| ||||||||| |  || | |||| |||    
T  9242356 gccatgtagcctactgttcccttagccgcagtcatggatacaatactttgatttttcgaacacatcttggccaaaccaaaatctgtaatttggggaatga 9242455  T
Q  271 agttattgtcaagtaagatattatgaggttttatatcaaagtgaagtatcctctggtcacatccttgatgaagatactcaattcctttcgctattccaag 370  Q
    | || |  || |  |||| ||||| ||| || || |||||||| || || || || ||||| ||||| || ||||||||||| || || ||||| || ||    
T  9242456 aattgtcatctaacaagacattattaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccattggctatacctag 9242555  T
Q  371 cgcaatttcttgtaacttctccca 394  Q
     ||||||| ||| ||||| |||||    
T  9242556 agcaattttttgcaacttatccca 9242579  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 394
Target Start/End: Complemental strand, 9300265 - 9300162
Alignment:
Q  291 ttatgaggttttatatcaaagtgaagtatcctctggtcacatccttgatgaagatactcaattcctttcgctattccaagcgcaatttcttgtaacttct 390  Q
    |||||||| || || ||||||||||| || || || ||||| ||||| ||||||||||| ||||| || ||||| || || ||||||| ||| ||||| |    
T  9300265 ttatgaggattgatgtcaaagtgaagaattctttgatcacaaccttggtgaagatactctattccattggctatgcctagagcaatttgttgcaacttat 9300166  T
Q  391 ccca 394  Q
    ||||    
T  9300165 ccca 9300162  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 394
Target Start/End: Original strand, 9420670 - 9420725
Alignment:
Q  339 tgaagatactcaattcctttcgctattccaagcgcaatttcttgtaacttctccca 394  Q
    |||||||||||||| ||||| ||||| ||||| ||||||| ||||| |||||||||    
T  9420670 tgaagatactcaatacctttggctatgccaagagcaatttgttgtagcttctccca 9420725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 394
Target Start/End: Original strand, 9437753 - 9437808
Alignment:
Q  339 tgaagatactcaattcctttcgctattccaagcgcaatttcttgtaacttctccca 394  Q
    |||||||||||||| ||||| ||||| ||||| ||||||| ||||| |||||||||    
T  9437753 tgaagatactcaatacctttggctatgccaagagcaatttgttgtagcttctccca 9437808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 205
Target Start/End: Complemental strand, 8962695 - 8962561
Alignment:
Q  71 attctgtcttcccccgaccatctctagcaacaacattccaaaactataaacatcagacttgtacgacacatttccaaagttcctagagaaaacttctggt 170  Q
    ||||| |||||| ||||||||||| |||| |||||||||| | || || | |||||| || || || ||||| |||||||| | ||| || ||||| |||    
T  8962695 attctttcttcctccgaccatctccagcagcaacattccatagctgtatatatcagatttataagagacattcccaaagtttcgagaaaatacttcaggt 8962596  T
Q  171 gctatgtaaccaatagtccccctagccgcggtcat 205  Q
    || ||||| || |  || ||||||||||| |||||    
T  8962595 gccatgtatcctaatgttcccctagccgcagtcat 8962561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 9069625 - 9069686
Alignment:
Q  69 acattctgtcttcccccgaccatctctagcaacaacattccaaaactataaacatcagactt 130  Q
    ||||||| |||||| || ||||| |||||||||||||||||| |||| || | |||||||||    
T  9069625 acattctttcttcctccaaccatttctagcaacaacattccataactgtatatatcagactt 9069686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 394
Target Start/End: Original strand, 9257439 - 9257548
Alignment:
Q  285 aagatattatgaggttttatatcaaagtgaagtatcctctggtcacatccttgatgaagatactcaattcctttcgctattccaagcgcaatttcttgta 384  Q
    |||| ||||||||| || || ||||||||||| || || || ||||| | ||| ||||||||||| ||||| || ||||| || || ||||||| ||| |    
T  9257439 aagacattatgaggattgatgtcaaagtgaagaattctttgatcacaactttggtgaagatactcgattccattggctatgcctagagcaatttgttgca 9257538  T
Q  385 acttctccca 394  Q
    |||| |||||    
T  9257539 acttgtccca 9257548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 9242611 - 9242639
Alignment:
Q  426 gaaatgaatttctgcaacgaaccatttgg 454  Q
    |||||||||||||||||||||||||||||    
T  9242611 gaaatgaatttctgcaacgaaccatttgg 9242639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 9257580 - 9257608
Alignment:
Q  426 gaaatgaatttctgcaacgaaccatttgg 454  Q
    |||||||||||||||||||||||||||||    
T  9257580 gaaatgaatttctgcaacgaaccatttgg 9257608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 370
Target Start/End: Complemental strand, 27696383 - 27696125
Alignment:
Q  112 aactataaacatcagacttgtacgacacatttccaaagttcctagagaaaacttctggtgctatgtaaccaatagtccccctagccgcggtcatggaaac 211  Q
    ||||||||||||| ||||| || || ||| | |||||||| ||||| || || ||||| || ||||| || | ||| |||||||||| |||||| || ||    
T  27696383 aactataaacatctgacttataggatacaatgccaaagtttctagaaaatacctctggcgcaatgtagcccaaagttcccctagccgtggtcattgacac 27696284  T
Q  212 cgcactttgatcctttgaacaaagcttagccagaccaaaatcagatatcttgggagtgaagttattgtcaagtaagatattatgaggttttatatcaaag 311  Q
       ||||   || || |||||||| || |||| |||||||||||| || ||||| ||||| || | ||| || || |  ||||||||||| ||||||||     
T  27696283 aatacttctttctttggaacaaagttttgccaaaccaaaatcagaaattttgggtgtgaaattgtcgtctagcaatacgttatgaggtttgatatcaaaa 27696184  T
Q  312 tgaagtatcctctggtcacatccttgatgaagatactcaattcctttcgctattccaag 370  Q
    || || || |  |  ||||| ||||||||||||||||||||||| |||||||| |||||    
T  27696183 tggagaattcgtttatcacaaccttgatgaagatactcaattcccttcgctataccaag 27696125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 526
Target Start/End: Complemental strand, 27696066 - 27695969
Alignment:
Q  429 atgaatttctgcaacgaaccatttggtaaatactcgtacacaagagctcgtgtgtgtccatcggcacaaaagccaactaagtgaacaacattgacgtg 526  Q
    ||||| |||||||||||||| ||||||||| | || ||||| |  |||||| ||| |||||| |||||||| ||||| ||| || | || ||||||||    
T  27696066 atgaaattctgcaacgaaccttttggtaaaaattcatacaccaaggctcgtttgtttccatctgcacaaaaaccaaccaagcgagccacgttgacgtg 27695969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 394
Target Start/End: Complemental strand, 9171683 - 9171571
Alignment:
Q  282 agtaagatattatgaggttttatatcaaagtgaagtatcctctggtcacatccttgatgaagatactcaattcctttcgctattccaagcgcaatttctt 381  Q
    |||||||  |||||||| || || ||||||||||| || || || ||||| ||||| || |||||||||||||| || |||||||| || ||||||| ||    
T  9171683 agtaagacgttatgaggattaatgtcaaagtgaagaattctttgatcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgtt 9171584  T
Q  382 gtaacttctccca 394  Q
    | ||||| |||||    
T  9171583 gcaacttgtccca 9171571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 30961203 - 30961158
Alignment:
Q  87 accatctctagcaacaacattccaaaactataaacatcagacttgt 132  Q
    ||||| |||| ||||| ||||||| |||||||||||||||||||||    
T  30961203 accatttctaacaacatcattccataactataaacatcagacttgt 30961158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 30992685 - 30992640
Alignment:
Q  87 accatctctagcaacaacattccaaaactataaacatcagacttgt 132  Q
    ||||| |||| ||||| ||||||| |||||||||||||||||||||    
T  30992685 accatttctaacaacatcattccataactataaacatcagacttgt 30992640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 31145383 - 31145428
Alignment:
Q  87 accatctctagcaacaacattccaaaactataaacatcagacttgt 132  Q
    ||||| |||||||||| ||||||| |||||||||||||||| ||||    
T  31145383 accatttctagcaacatcattccataactataaacatcagatttgt 31145428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 31171696 - 31171741
Alignment:
Q  87 accatctctagcaacaacattccaaaactataaacatcagacttgt 132  Q
    ||||| |||||||||| ||||||| |||||||||||||||| ||||    
T  31171696 accatttctagcaacatcattccataactataaacatcagatttgt 31171741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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