View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2877_low_21 (Length: 238)

Name: NF2877_low_21
Description: NF2877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2877_low_21
NF2877_low_21
[»] chr2 (3 HSPs)
chr2 (1-221)||(38895135-38895359)
chr2 (68-159)||(38556674-38556766)
chr2 (99-159)||(1845110-1845170)
[»] chr1 (5 HSPs)
chr1 (100-159)||(22863078-22863137)
chr1 (97-162)||(14346490-14346555)
chr1 (99-163)||(2473062-2473126)
chr1 (67-156)||(25412476-25412566)
chr1 (68-120)||(39737172-39737225)
[»] chr3 (2 HSPs)
chr3 (111-165)||(980754-980808)
chr3 (67-159)||(44890488-44890581)
[»] chr8 (3 HSPs)
chr8 (115-164)||(254679-254728)
chr8 (115-164)||(661130-661179)
chr8 (115-164)||(846928-846977)
[»] chr5 (2 HSPs)
chr5 (68-156)||(29570906-29570995)
chr5 (99-159)||(39981448-39981508)
[»] chr7 (1 HSPs)
chr7 (67-138)||(37155769-37155841)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 38895359 - 38895135
Alignment:
Q  1 tcttgaattttgacactaaaattcaataagcaaagattttccaattggtcctat----gctnnnnnnnntttatgacaggccgtatgccagacttagggt 96  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||    |||        |||||||||||||| ||||||||||||||||    
T  38895359 tcttgaattttgacactaaaattcaataagcaaagactttccaattggtcctatatatgctaaaaaaaatttatgacaggccgcatgccagacttagggt 38895260  T
Q  97 ttaaaaaatttgataggtcagacttaaactttgcaaagcctaactcgatctagcctattcccaccctaagagggagtacaaattatgacccttacaagct 196  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  38895259 ttaaaaaatttgataggtcagacttaaactttgcaaagcttaactcgatctagcttattcccatcctaagagggagtacaaattatgacccttacaagct 38895160  T
Q  197 agtcatgctatattaattttcttac 221  Q
    |||||||||||||||||||||||||    
T  38895159 agtcatgctatattaattttcttac 38895135  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 38556674 - 38556766
Alignment:
Q  68 tatgacaggccgtatgccagacttagggtttaaaaaatt-tgataggtcagacttaaactttgcaaagcctaactcgatctagcctattccca 159  Q
    |||||||||||| | |||||||||| | ||||||||| | ||  ||||||||||||  | |||||||||||||||||   |||||||||||||    
T  38556674 tatgacaggccgcaggccagacttaagctttaaaaaaatatggcaggtcagacttaggccttgcaaagcctaactcggcttagcctattccca 38556766  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 1845170 - 1845110
Alignment:
Q  99 aaaaaatttgataggtcagacttaaactttgcaaagcctaactcgatctagcctattccca 159  Q
    ||||||| || |||||||| ||||  | |||||||||||||||||  ||||||||||||||    
T  1845170 aaaaaatatggtaggtcaggcttaggccttgcaaagcctaactcggcctagcctattccca 1845110  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 22863137 - 22863078
Alignment:
Q  100 aaaaatttgataggtcagacttaaactttgcaaagcctaactcgatctagcctattccca 159  Q
    |||||||||| ||||||||||||  | |||||||||||||||||| ||||||||||||||    
T  22863137 aaaaatttgacaggtcagacttaggccttgcaaagcctaactcgacctagcctattccca 22863078  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 14346490 - 14346555
Alignment:
Q  97 ttaaaaaatttgataggtcagacttaaactttgcaaagcctaactcgatctagcctattcccaccc 162  Q
    ||||||| ||||| |||||||||||| || ||||||| | ||||||| ||||||||||| ||||||    
T  14346490 ttaaaaattttgacaggtcagacttagaccttgcaaaacttaactcggtctagcctatttccaccc 14346555  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 2473062 - 2473126
Alignment:
Q  99 aaaaaatttgataggtcagacttaaactttgcaaagcctaactcgatctagcctattcccaccct 163  Q
    |||||||||| |||| |||||||| || ||||||||||||||||   |||||||||| |||||||    
T  2473062 aaaaaatttggtaggccagacttagaccttgcaaagcctaactcagcctagcctatttccaccct 2473126  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 25412476 - 25412566
Alignment:
Q  67 ttatgacaggccgtatgccagacttagggtttaa-aaaatttgataggtcagacttaaactttgcaaagcctaactcgatctagcctattc 156  Q
    |||||| |||||||| |||| ||||| | ||||| ||||| ||||||||||| ||||  | |||||||||||| ||||  |||||||||||    
T  25412476 ttatgataggccgtaagccaaacttaagctttaagaaaatatgataggtcaggcttaggccttgcaaagcctagctcgggctagcctattc 25412566  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 39737225 - 39737172
Alignment:
Q  68 tatgacaggccgtatgccagacttagg-gtttaaaaaatttgataggtcagact 120  Q
    |||||||||||| ||||||||||||||  ||||||||||||| |||| ||||||    
T  39737225 tatgacaggccgcatgccagacttaggcctttaaaaaatttggtaggccagact 39737172  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 980808 - 980754
Alignment:
Q  111 aggtcagacttaaactttgcaaagcctaactcgatctagcctattcccaccctaa 165  Q
    ||||||||||| ||| || |||||||||| |||||||||||||||||||||||||    
T  980808 aggtcagacttgaaccttacaaagcctaattcgatctagcctattcccaccctaa 980754  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 44890581 - 44890488
Alignment:
Q  67 ttatgacaggccgtatgccagacttagggttta-aaaaatttgataggtcagacttaaactttgcaaagcctaactcgatctagcctattccca 159  Q
    |||||||| ||||||  |||||||||||  ||| |||||||||| ||| |||||||   |||||||||||||| |||   ||||||||||||||    
T  44890581 ttatgacatgccgtagaccagacttaggccttacaaaaatttgacaggccagactttggctttgcaaagcctagctcagcctagcctattccca 44890488  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 254728 - 254679
Alignment:
Q  115 cagacttaaactttgcaaagcctaactcgatctagcctattcccacccta 164  Q
    ||||||||| ||||||||||||||||||||  |||| ||||||| |||||    
T  254728 cagacttaagctttgcaaagcctaactcgacttagcttattccctcccta 254679  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 661130 - 661179
Alignment:
Q  115 cagacttaaactttgcaaagcctaactcgatctagcctattcccacccta 164  Q
    ||||||||| ||||||||||||||||||||  |||| ||||||| |||||    
T  661130 cagacttaagctttgcaaagcctaactcgacttagcttattccctcccta 661179  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 846928 - 846977
Alignment:
Q  115 cagacttaaactttgcaaagcctaactcgatctagcctattcccacccta 164  Q
    ||||||||| ||||||||||||||||||||  |||| ||||||| |||||    
T  846928 cagacttaagctttgcaaagcctaactcgacttagcttattccctcccta 846977  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 29570995 - 29570906
Alignment:
Q  68 tatgacaggccgtatgccagacttagggttt-aaaaaatttgataggtcagacttaaactttgcaaagcctaactcgatctagcctattc 156  Q
    |||||||| ||||| |||||||||| |  || ||||||||||| || ||||||| || | |||||||||||| ||| | |||||||||||    
T  29570995 tatgacagaccgtaggccagacttaagccttcaaaaaatttgacagatcagactcaagccttgcaaagcctacctcaacctagcctattc 29570906  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 39981508 - 39981448
Alignment:
Q  99 aaaaaatttgataggtcagacttaaactttgcaaagcctaactcgatctagcctattccca 159  Q
    ||||||||||| || || ||||||  | |||||||||||||||||| |||||||| |||||    
T  39981508 aaaaaatttgacagatcggacttaggccttgcaaagcctaactcgacctagcctactccca 39981448  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 37155769 - 37155841
Alignment:
Q  67 ttatgacaggccgtatgccagacttagggttta-aaaaatttgataggtcagacttaaactttgcaaagccta 138  Q
    ||||||||| ||| ||||||||||||||  ||| |||||||||| ||| ||||||||  | ||||||||||||    
T  37155769 ttatgacagaccgcatgccagacttaggccttacaaaaatttgacaggccagacttaggccttgcaaagccta 37155841  T

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