View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2877_low_22 (Length: 237)

Name: NF2877_low_22
Description: NF2877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2877_low_22
NF2877_low_22
[»] chr3 (1 HSPs)
chr3 (103-237)||(8528653-8528783)
[»] chr5 (5 HSPs)
chr5 (112-173)||(42120001-42120062)
chr5 (57-105)||(34545168-34545216)
chr5 (57-104)||(30192425-30192472)
chr5 (57-106)||(18512744-18512793)
chr5 (62-98)||(40625013-40625049)
[»] chr1 (3 HSPs)
chr1 (57-98)||(50036786-50036827)
chr1 (55-98)||(49395542-49395585)
chr1 (64-105)||(7942906-7942947)
[»] chr8 (1 HSPs)
chr8 (47-102)||(13782170-13782226)
[»] chr4 (1 HSPs)
chr4 (71-105)||(43175666-43175700)
[»] chr7 (3 HSPs)
chr7 (55-103)||(13644355-13644403)
chr7 (71-103)||(14102455-14102487)
chr7 (71-103)||(14412472-14412504)
[»] chr2 (1 HSPs)
chr2 (57-101)||(14002455-14002499)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 8528783 - 8528653
Alignment:
Q  103 aaactgaatattgtattgtgaatttatgttgcgttcctcacactttccaatttttg-tccttttgttctttttccaatttcttatgacatcatgatgtga 201  Q
    ||||||||||||||||||| |||||||||| |||||| ||||||||| |||||||  ||||||||||||||||||||||||||||| |||||||||||||    
T  8528783 aaactgaatattgtattgtcaatttatgttccgttccacacactttcaaattttttatccttttgttctttttccaatttcttatgccatcatgatgtga 8528684  T
Q  202 gctatgtattgtttgcttcagttcaagtcatccttc 237  Q
     |||     |||||||||||||||||||||||||||    
T  8528683 acta-----tgtttgcttcagttcaagtcatccttc 8528653  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 42120062 - 42120001
Alignment:
Q  112 attgtattgtgaatttatgttgcgttcctcacactttccaatttttgtccttttgttctttt 173  Q
    |||||||| | |||||| | || |||||| ||||||||||||||| ||||||||||||||||    
T  42120062 attgtattttcaatttacgctgtgttccttacactttccaattttcgtccttttgttctttt 42120001  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 34545216 - 34545168
Alignment:
Q  57 ttacttgtgttttccagccaaatcaaatgtgtcaacagcaatactcaaa 105  Q
    |||| |||||||| |||||  ||||||||||||||||||||||||||||    
T  34545216 ttacatgtgtttttcagccctatcaaatgtgtcaacagcaatactcaaa 34545168  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 30192472 - 30192425
Alignment:
Q  57 ttacttgtgttttccagccaaatcaaatgtgtcaacagcaatactcaa 104  Q
    ||||| ||||||  ||| ||||||||||||||||||||||||||||||    
T  30192472 ttactcgtgtttctcagtcaaatcaaatgtgtcaacagcaatactcaa 30192425  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 18512744 - 18512793
Alignment:
Q  57 ttacttgtgttttccagccaaatcaaatgtgtcaacagcaatactcaaac 106  Q
    ||||| ||||||  ||||||||  ||||||||||||||||||||||||||    
T  18512744 ttactcgtgtttctcagccaaactaaatgtgtcaacagcaatactcaaac 18512793  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 40625013 - 40625049
Alignment:
Q  62 tgtgttttccagccaaatcaaatgtgtcaacagcaat 98  Q
    |||||||  ||||||||||||||||||||||||||||    
T  40625013 tgtgtttctcagccaaatcaaatgtgtcaacagcaat 40625049  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 50036827 - 50036786
Alignment:
Q  57 ttacttgtgttttccagccaaatcaaatgtgtcaacagcaat 98  Q
    ||||||||||||  ||||||||||||||||||||||||||||    
T  50036827 ttacttgtgtttctcagccaaatcaaatgtgtcaacagcaat 50036786  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 49395585 - 49395542
Alignment:
Q  55 aattacttgtgttttccagccaaatcaaatgtgtcaacagcaat 98  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||||    
T  49395585 aattactcgtgtttttcagccaaatcaaatgtgtcaacaacaat 49395542  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 7942947 - 7942906
Alignment:
Q  64 tgttttccagccaaatcaaatgtgtcaacagcaatactcaaa 105  Q
    |||||| ||||||||||||||||||| ||| |||||||||||    
T  7942947 tgtttttcagccaaatcaaatgtgtccacaacaatactcaaa 7942906  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 13782226 - 13782170
Alignment:
Q  47 atttaagtaatt-acttgtgttttccagccaaatcaaatgtgtcaacagcaatactc 102  Q
    |||||||||||| ||| ||||||  ||||||||||||||||||||||| ||||||||    
T  13782226 atttaagtaatttactcgtgtttctcagccaaatcaaatgtgtcaacaacaatactc 13782170  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 43175700 - 43175666
Alignment:
Q  71 cagccaaatcaaatgtgtcaacagcaatactcaaa 105  Q
    |||||||| ||||||||||||||||||||||||||    
T  43175700 cagccaaaccaaatgtgtcaacagcaatactcaaa 43175666  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 13644403 - 13644355
Alignment:
Q  55 aattacttgtgttttccagccaaatcaaatgtgtcaacagcaatactca 103  Q
    ||||||| ||||||  |||||||||||||||||| |||| |||||||||    
T  13644403 aattactcgtgtttctcagccaaatcaaatgtgtgaacaacaatactca 13644355  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 14102455 - 14102487
Alignment:
Q  71 cagccaaatcaaatgtgtcaacagcaatactca 103  Q
    |||||||| ||||||||||||||||||||||||    
T  14102455 cagccaaaccaaatgtgtcaacagcaatactca 14102487  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 14412472 - 14412504
Alignment:
Q  71 cagccaaatcaaatgtgtcaacagcaatactca 103  Q
    |||||||| ||||||||||||||||||||||||    
T  14412472 cagccaaaccaaatgtgtcaacagcaatactca 14412504  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 14002499 - 14002455
Alignment:
Q  57 ttacttgtgttttccagccaaatcaaatgtgtcaacagcaatact 101  Q
    ||||| ||||||  |||||||| ||||||||||||||||||||||    
T  14002499 ttactcgtgtttctcagccaaaccaaatgtgtcaacagcaatact 14002455  T

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