View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2877_low_24 (Length: 233)

Name: NF2877_low_24
Description: NF2877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2877_low_24
NF2877_low_24
[»] chr4 (9 HSPs)
chr4 (1-218)||(25160057-25160274)
chr4 (19-197)||(25168636-25168814)
chr4 (19-197)||(25180304-25180482)
chr4 (19-197)||(25252452-25252630)
chr4 (110-196)||(25189340-25189426)
chr4 (108-190)||(24986311-24986393)
chr4 (108-181)||(25000779-25000852)
chr4 (113-197)||(25038736-25038820)
chr4 (144-197)||(25046750-25046803)
[»] chr3 (1 HSPs)
chr3 (5-201)||(9213688-9213884)
[»] chr2 (3 HSPs)
chr2 (112-203)||(42167210-42167301)
chr2 (112-202)||(42290566-42290656)
chr2 (131-203)||(42156742-42156814)
[»] chr6 (1 HSPs)
chr6 (109-190)||(29406203-29406284)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 25160057 - 25160274
Alignment:
Q  1 ccaaatagggcccgatcgcagaatcaccgccagtacaatttggattcaaccaactagagcaacgacccggtgccattcgcccattcgcatagccattttg 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  25160057 ccaaatagggctcgatcgcagaatcaccgccagtacaatttggattcaaccaactggagcaacgacccggtgccattcgcccatttgcatagccattttg 25160156  T
Q  101 gctgtagctccatggctcgttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatcttttctgaaa 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25160157 gctatagctccatggctcgttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatcttttctgaaa 25160256  T
Q  201 atttaaaaaacatgtaac 218  Q
    ||||||||||||||||||    
T  25160257 atttaaaaaacatgtaac 25160274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 25168636 - 25168814
Alignment:
Q  19 cagaatcaccgccagtacaatttggattcaaccaactagagcaacgacccggtgccattcgcccattcgcatagccattttggctgtagctccatggctc 118  Q
    ||||||||||||| || ||||||||||||||||||  |||||| ||||| |||||||||   ||||| ||||| |||| ||| |||||  ||||||| ||    
T  25168636 cagaatcaccgccggtgcaatttggattcaaccaagaagagcatcgaccaggtgccatttcaccatttgcatacccatcttgactgtaagtccatggttc 25168735  T
Q  119 gttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatcttttctg 197  Q
     |||||||| | |||||  || |||||||| ||||||   ||||| ||||||||||||||||||||||| |||||||||    
T  25168736 attcaaagttatccaatgttttactctatctccaaatgttttgaagcaaagttccgcatagtcttgaaagtcttttctg 25168814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 25180304 - 25180482
Alignment:
Q  19 cagaatcaccgccagtacaatttggattcaaccaactagagcaacgacccggtgccattcgcccattcgcatagccattttggctgtagctccatggctc 118  Q
    ||||||| || || || ||||||||||| ||||||  ||| || ||||| |||||||||   ||||| ||||| |||||||| ||||| |||||||||||    
T  25180304 cagaatctccaccggtgcaatttggattaaaccaagaagaacatcgacctggtgccattgcgccatttgcatatccattttgactgtaactccatggctc 25180403  T
Q  119 gttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatcttttctg 197  Q
     |||||||| | |||||  || |||||||| ||||||   || || |||||||||||||||||||||||||||||||||    
T  25180404 attcaaagttatccaatgttttactctatctccaaatgttttaaagcaaagttccgcatagtcttgaaaatcttttctg 25180482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 25252630 - 25252452
Alignment:
Q  19 cagaatcaccgccagtacaatttggattcaaccaactagagcaacgacccggtgccattcgcccattcgcatagccattttggctgtagctccatggctc 118  Q
    ||||||||||||| || ||||||||||||||||||  |||||| || || |||||||||   ||||| ||||| |||| ||| |||||  ||||||| ||    
T  25252630 cagaatcaccgccggtgcaatttggattcaaccaagaagagcatcgtcctggtgccatttcaccatttgcatacccatcttgactgtaagtccatggttc 25252531  T
Q  119 gttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatcttttctg 197  Q
     |||||||| | |||||  || |||||||| ||||||   ||||| ||||||||||||||||||||||| |||||||||    
T  25252530 attcaaagttatccaatgttttactctatctccaaatgttttgaagcaaagttccgcatagtcttgaaagtcttttctg 25252452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 25189340 - 25189426
Alignment:
Q  110 ccatggctcgttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatcttttct 196  Q
    |||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||| ||||| || ||||||||| ||||||| |||||    
T  25189340 ccatggttcgttaaaagtaacccagtacttcactctatctccaaattccttgaagcaaagatcagcatagtctcgaaaatcatttct 25189426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 24986311 - 24986393
Alignment:
Q  108 ctccatggctcgttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatc 190  Q
    |||||||| || |||||||||| |||||  || || |||||||||||||||||| | |||||||| |||||||| | ||||||    
T  24986311 ctccatggttcattcaaagtaatccaatgtttcaccctatcaccaaattccttgtagcaaagttcagcatagtccttaaaatc 24986393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 25000852 - 25000779
Alignment:
Q  108 ctccatggctcgttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtc 181  Q
    |||||||| || |||||||||| |||||  || || ||||| |||||||||||||| |||||||| ||||||||    
T  25000852 ctccatggttcattcaaagtaatccaatgtttcaccctatcgccaaattccttgaagcaaagttcagcatagtc 25000779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 25038736 - 25038820
Alignment:
Q  113 tggctcgttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatcttttctg 197  Q
    |||||| || || |||| ||||| ||| |||||||| || ||||||||||| || || || ||||||||||||||||| ||||||    
T  25038736 tggctcattgaaggtaatccaatgcttcactctatctccgaattccttgaagcatagctctgcatagtcttgaaaatcatttctg 25038820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 25046750 - 25046803
Alignment:
Q  144 ctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatcttttctg 197  Q
    |||||||||||||||||||| ||||| || |||||||| | |||||| ||||||    
T  25046750 ctatcaccaaattccttgaagcaaagatcagcatagtccttaaaatcatttctg 25046803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 5 - 201
Target Start/End: Complemental strand, 9213884 - 9213688
Alignment:
Q  5 atagggcccgatcgcagaatcaccgccagtacaatttggattcaaccaactagagcaacgacccggtgccattcgcccattcgcatagccattttggctg 104  Q
    ||||||| | |||||||||||||| || || ||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| |||    
T  9213884 atagggctcaatcgcagaatcaccaccggtgcaatttggattcaaccaactagaacaacgacctggtgccattcgtccatttgcatagccattttgactg 9213785  T
Q  105 tagctccatggctcgttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatcttttctgaaaa 201  Q
    || |||||||| || ||||||||||||||||| || || ||||||||||| ||||| || |||||||| ||||||||||| ||||||||||||||||    
T  9213784 taactccatggttcattcaaagtaacccaatatttcaccctatcaccaaactccttaaagcaaagttcagcatagtcttggaaatcttttctgaaaa 9213688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 42167210 - 42167301
Alignment:
Q  112 atggctcgttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatcttttctgaaaatt 203  Q
    ||||||| || ||||||| ||||||||| || ||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  42167210 atggctcattgaaagtaatccaatacttcaccctatctccaaactctttgaaacaaagttccgcatagtcttgaaaatcatttctgaaaatt 42167301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 42290656 - 42290566
Alignment:
Q  112 atggctcgttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatcttttctgaaaat 202  Q
    ||||||| || ||||| | ||||||||| || ||||| ||||| || ||||||||||||||||| |||||||||||||| ||||| |||||    
T  42290656 atggctcattgaaagtgatccaatacttcaccctatctccaaactctttgaaacaaagttccgcgtagtcttgaaaatcatttctaaaaat 42290566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 42156742 - 42156814
Alignment:
Q  131 ccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatcttttctgaaaatt 203  Q
    ||||||||| || ||||| ||||| || |||||||||||||||||||| ||||||||||| ||||| ||||||    
T  42156742 ccaatacttcaccctatctccaaactctttgaaacaaagttccgcataatcttgaaaatcatttctaaaaatt 42156814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 29406284 - 29406203
Alignment:
Q  109 tccatggctcgttcaaagtaacccaatacttgactctatcaccaaattccttgaaacaaagttccgcatagtcttgaaaatc 190  Q
    |||||||||||||||| || | ||||| ||| || ||||| || ||||||||  ||||||| || ||||||||| |||||||    
T  29406284 tccatggctcgttcaatgtgatccaatgcttcaccctatctccgaattccttataacaaagctctgcatagtctcgaaaatc 29406203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University