View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2877_low_25 (Length: 230)
Name: NF2877_low_25
Description: NF2877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2877_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 47001183 - 47001383
Alignment:
| Q |
1 |
caactgcagctaatactgtgactgacttcatgggcacatcatttctcctttgtttgcttggaggttttctagcagattccttccttggaagatataaaac |
100 |
Q |
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| T |
47001183 |
caactgcagctaatactgtgactgacttcatgggcacatcatttctcctttgtttgcttggaggttttctagcagattccttccttggaagatataaaac |
47001282 |
T |
|
| Q |
101 |
aattggaatcttttctgcaatacaaacactggttagttacattactattagttctaagtttcatttttattccgccgaaataaacttacaccatctctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47001283 |
aattggaatcttttctgcaatacaaacactggttagttacattactattagttctaagtttcatttatattccgccgaaataaacttacaccatctctcc |
47001382 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
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| |
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|
| T |
47001383 |
t |
47001383 |
T |
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